Gene
RNA
| Item | Value |
|---|---|
| gene id | G74256 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 7102190 ~ 7102463 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU84680 | True | 274 | lncRNA | 0.31 | 1 | 7102190 | 7102463 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_07092852_07097731 | EPHX5 | coding | downstream | 4459 | 7092852 ~ 7097731 (-) |
| CI01000012_07032479_07034631 | NA | coding | downstream | 66989 | 7020730 ~ 7035201 (-) |
| CI01000012_06989295_06990487 | NA | coding | downstream | 111347 | 6988932 ~ 6990843 (-) |
| CI01000012_06979304_06984075 | NA | coding | downstream | 117246 | 6979296 ~ 6984944 (-) |
| CI01000012_06872835_06911259 | NA | coding | downstream | 190222 | 6872715 ~ 6911968 (-) |
| CI01000012_07113504_07118919 | MGME1 | coding | upstream | 10893 | 7113356 ~ 7119168 (-) |
| CI01000012_07164949_07166936 | NA | coding | upstream | 62376 | 7164839 ~ 7166936 (-) |
| CI01000012_07210006_07251043 | NA | coding | upstream | 107132 | 7209595 ~ 7251043 (-) |
| CI01000012_07268516_07270856 | NA | coding | upstream | 166025 | 7268488 ~ 7270856 (-) |
| CI01000012_07316139_07320354 | NA | coding | upstream | 213567 | 7314756 ~ 7321193 (-) |
| G74255 | NA | non-coding | downstream | 330 | 7101425 ~ 7101860 (-) |
| G74117 | NA | non-coding | downstream | 48560 | 7038496 ~ 7053630 (-) |
| G74252 | NA | non-coding | downstream | 81616 | 7014865 ~ 7020574 (-) |
| G74079 | NA | non-coding | upstream | 1590 | 7104053 ~ 7104444 (-) |
| G74073 | NA | non-coding | upstream | 2961 | 7105424 ~ 7105836 (-) |
| G74121 | NA | non-coding | upstream | 5572 | 7108035 ~ 7109938 (-) |
| G74280 | NA | non-coding | upstream | 93568 | 7196031 ~ 7196281 (-) |
| G74281 | NA | non-coding | upstream | 94263 | 7196726 ~ 7197018 (-) |
| G72629 | NA | other | downstream | 954696 | 6147011 ~ 6147494 (-) |
| G72294 | NA | other | downstream | 1636333 | 5462840 ~ 5465857 (-) |
| CI01000012_05414096_05416676 | TTC9 | other | downstream | 1685410 | 5413369 ~ 5416780 (-) |
| G72204 | NA | other | downstream | 1799984 | 5293773 ~ 5302206 (-) |
| G72068 | NA | other | downstream | 2322058 | 4776220 ~ 4780132 (-) |
| CI01000012_07356934_07358497 | NA | other | upstream | 252789 | 7356863 ~ 7358612 (-) |
| G74648 | NA | other | upstream | 1161866 | 8264329 ~ 8265654 (-) |
| G74701 | NA | other | upstream | 1264556 | 8367019 ~ 8367643 (-) |
| CI01000012_09068458_09070536 | NA | other | upstream | 1965443 | 9067906 ~ 9070765 (-) |
| CI01000012_09071892_09073410 | NA | other | upstream | 1968908 | 9071371 ~ 9073457 (-) |
