atad3a (atad3a,LOC103357928)


Basic Information

Item Value
gene id atad3a
gene name atad3a,LOC103357928
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18194807 ~ 18208696 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682521.1
GAGTCTTGGTTCAGCTCCGCAGCGGCAGCAGCGTGACACTCGCACACGTGTGTCCGCGGTAGCAGCGCCGGTTCTCGGCTCCAGCTCTCGTTTCTTCGCCCGCCCGTTTCTGCCAAACCAGAACCATGTCGTGGCTTTTCGGTCTGAACCGCGGTCAGCCCGAGCCTCCCCCGGACCTGCCCGTACCGCCGCCTCCGCCGCCTCCGCCCGGGGGCTCGGGGGGCTCCGGCGGGGGAGACAAGCCCAAGGACAAGTGGAGCAACTTCGACCCCACCGGGCTGGAGAGAGCGGCCCAGGCGGCCCGGGACCTCGACAAGTCCCGTCATGCTAAAGAAGCGCTGGAACTTTCCCGCATGCAGGAGCAGACGGTTCAGATGGAGCATCAGAGTAAGATGAAGgaaTATGAAGCAGCGCTGGAGCAGCTGAAGGGGGATCAGATCCGTATCCAgggggaggagaggaggaaaaCTCTGAATGAGGAAACTAAACAGCATCAGTCGAGAGCTCAGTACCAGGATAAACTGGCCCGGCAGCGCTATGAGGACCAGCTACGACAGCAGcaagctCTTAATGAGGAGAACCTGCGGCGGCAGGAGGAGTCTGTGCAGAAGCAGGAGGCCATGAGGAAAGCCACCATCGAGCATGAGATGGAGCTGAGGCATAAGAATGAGATGCTGCGGGTGGAGGCCGAGGCTAAAGCTCGAGCTCgggtggagagagagaacgcCGACATCATCCGGGAACAGATCCGCCTTAAAGCAGCCGAACACAGACAGACTGTCCTGGATAGTATAcgAACTGCTGGTGCTGTGTTTGGGGAGGgatttaaagcttttatttcaGACTGGGACAAAGTTACAGCAAcgGTGGCAGGTTTGACTCTGCTGGCTGTAGGTGTGTATACTGCGCGTAATGCTACAGGTGTGGGGGCGCGCTACATCGAGGCTCGACTCGGTAAACCTTCACTAGTGAGAGAGACTTCACGAATCACCGTGACTGAAGCTATTAAACATCCTGtgaagatgagTAAGAGGTTGATGAGTAAGCCTCAGGATGCTCTGGAGGGAGTTGTACTCAGTcCATCTCTGGAGGAGCGTGTTCGTGACATCGCTATCGCAACACGCAACACTCGCCAGAACCGCGGCCTCTACAGGAATATACTGATGTACGGCCCCCCGGGGACTGGAAAAACACTATTCGCCAAGAAGTTGGCGGTGCACTCTGGGATGGACTACGCCATAATGACCGGAGGAGACGTCGCCCCCATGGGGCGGGAGGGCGTTACTGCCATGCACAAAGTGTTTGACTGGGCCGGCACCAGCCGCAGAGGtctgCTGCTGTTTGTGGATGAAGCTGATGCATTCCTGCGCAAGAGAGccactGAGAAGATCAGTGAGGATCTGCGAGCGACACTGAACGCATTCCTGTACCGAACTGGAGAGCAGAGCaacaaGTTCATGCTGGTTTTGGCCAGTAATCAGCCAGAGCAGTTTGATTGGGCCATTAATGATCGAATTGATGAAATAGTGAACTTTGCTCTGCCTGGTCCTGAAGAGCGAGAGCGGCTCGTCCGTCTTTACTTCGACAGATACGTACTGGAACCGGCCACTGGGGGGAAACAGCGTCTGAAGCTGGCTCAGTTTGACTATGGAAAGAAGTGCTCAGAAATTGCTAAGCGAACAGAGGGAATGTCCGGGCGAGAGATTTCCAAACTGGGCGTGGCCTGGCAGgccgCTGCCTACTCCTCTGAGGACGGCGTTCTGACCGAGGCGATGATCGACGCTCGGGTGGACGACGCTGTCCGGCAGCACGCGCAGAAGATGAACTGGCTGCAGGACAGTGAGGGCACCACGATGTCCCCCAGCCACCAGGGGGCAGCTGTGGGTAAAGGTGCCAAAATGGGCTTTATAGTGCCTCAGGATGCCCCCTCTAAATCTGAGGAGGTGCTGTCTCCCCTGCAGGGGTCCTGCCCTGCTCCGGACTCTACCATTCCAGCAGGAGAGGGGGGAGCGGCCGCGGATAAACAACCAGTCCCACCAAAGGAGGAGGGCACACCAGTTTAACCAGTCCGGTCCGGTTCAGCTGAATCCAGTCCAGAGGCCATATTTACACCACCACACTGCAGAACAGGACAGCAGCTCCTTCCTGACTGTGAAAAAAGATTAGCTggacatatatatgtatatgtttacagtgtgtatacatatgtatgaatgtgtggatatatgtgtgtgtatatgaagcAGGATCAGGAgtctgcagagtgtgtgtgtgtgtgttactcactTACTGACCCCTCCAGACCCGGGGAAACACTGTTCAGGTACCTTCAGATGGATTTACAAAGGTTCTGTGTCTGTATGCCTgtctgttaataataataataattataattatattataatactataAAGGGTCA

Function

symbol description
atad3a Enables identical protein binding activity. Involved in antiviral innate immune response; negative regulation of apoptotic process; and regulation of cell growth. Located in mitochondrion.

NR:

description
PREDICTED: ATPase family AAA domain-containing protein 3A

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K17681 ATAD3A_B; ATPase family AAA domain-containing protein 3A/B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682521.1 True 2419 mRNA 0.55 17 18194807 18208696

Neighbor

gene id symbol gene type direction distance location
LOC103031655 NA coding downstream 45170 18144575 ~ 18149637 (-)
capzb capzb,LOC105897928,LOC106565651,LOC106583096 coding downstream 153304 18022458 ~ 18041503 (-)
LOC103032297 celsr2 coding downstream 175129 17933593 ~ 18019678 (-)
LOC103045494 LOC108415559 coding downstream 313857 17856281 ~ 17880950 (-)
med20 med20 coding downstream 357467 17830616 ~ 17837340 (-)
crocc LOC108415825 coding upstream 37114 18245810 ~ 18288745 (-)
necap2 necap2,LOC108414094 coding upstream 80745 18289441 ~ 18302232 (-)
LOC103030071 LOC107395124,LOC106516167,LOC105904852,LOC108254707,LOC107679546,LOC107711958,LOC107591783 coding upstream 192527 18401223 ~ 18413418 (-)
slc25a20 slc25a20 coding upstream 208528 18417224 ~ 18428759 (-)
nckipsd nckipsd coding upstream 225839 18434535 ~ 18450707 (-)
G190982 NA non-coding downstream 3434 18189784 ~ 18191373 (-)
G190933 NA non-coding downstream 123165 17974531 ~ 18071642 (-)
G190931 NA non-coding downstream 185943 17949748 ~ 18008864 (-)
G190936 NA non-coding downstream 199447 17994680 ~ 17995360 (-)
G190917 NA non-coding downstream 256657 17930156 ~ 17938150 (-)
G190983 NA non-coding upstream 6052 18214748 ~ 18215095 (-)
G190958 NA non-coding upstream 20294 18228990 ~ 18229662 (-)
G190988 NA non-coding upstream 31398 18240094 ~ 18248374 (-)
G190990 NA non-coding upstream 101780 18310476 ~ 18360755 (-)
G190997 NA non-coding upstream 153385 18362081 ~ 18367210 (-)
LOC111195395 NA other downstream 18643 18167240 ~ 18176164 (-)
G190788 NA other downstream 975027 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 1001060 17181114 ~ 17193747 (-)
cass4 NA other downstream 1325346 16833850 ~ 16869461 (-)
ptpdc1 NA other downstream 1595490 16569623 ~ 16599317 (-)
LOC103041510 LOC108414096 other upstream 102756 18311452 ~ 18315337 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 499623 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 688813 18897509 ~ 18902285 (-)
LOC103036492 card19,LOC108443695 other upstream 1302625 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 2890651 21099347 ~ 21103218 (-)

Expression


Co-expression Network