nckipsd (nckipsd)


Basic Information

Item Value
gene id nckipsd
gene name nckipsd
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18434535 ~ 18450707 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682534.1
tttatgatTCGACCGGCTTTTGGGAAGAACCGAATCAGAAGAATCGACTCTTGGACTGGAGCAGAGCCGCCGTGTTTACGGGCTTTTCGAGAAGTTGCTGTCCCTCCTGCGGGTCTCTGCGGGTTTGTGCGGGTTTGTGCGGCTTTGTGGAGACTCGGCAGTTCGGGCGGGGACTGAGGCCGGGCTGGGCCGCGCTGTGAGCCGCAGGGACTGTGCGCTGAGGCCGGTAGCCGGgctgtgtatgggtgtgtaGAGGGTATGAGCGGAGGCGCAGCGCGGGGGTAGAGAGTCATGTACCGCTCCCTGTTCGCCTTCAGATCCGGGGAGCCGAACTCCCTCCGCTTCTCCCCCGGAGAAACCTTCCTCATCCTGGAGCGCAGCAACCAGCACTGGTGGCTCGGGTCCCGCTGCAGCTCCGGGGAGACCGGATACATCCCCGCCTCTTACATAGAGAAGATCCAGgCTCCAGAGCAGGATGATGTTCTGCAGTCTATTGATCGAGCCATTGAGGGGATCCATAACATGGCGATGAAGAACGGAGGGAAATACAACCTGGAGCAGAGAGAagtgctgcaGAAGTTGATTCACCACAGGAAGGAAACTCTTTCCCGTCGGAGTCCGACTCCGTCCAAGCAGGGAATTCCCTCCTCCAGCAGTGAGCTGTCACTCAGCCACACCCCCCAGCCGCCCAACGGCCTGAGCCGCGCCTTCAGCTGCCAGGGCAGCGAGCCGATCGCTGACGTCTCTGAGAACGTCCCCGGACTTTATCAGATTCCCCCTCAACCCCGCAGAGCCGCTCCTATAACCCCCCCTCCTccagagaaacagagggagacCCGACgcccagATCCTGATGTGCGTCAGAGTGACCCCCTCTGGCCCGCCCCCAGCCCTGATCAGCCAACTGCTGCAGCTTCGCCCTCCCCAATCTCCCCCTCCTCACGCTCTGGCTCCACCCACTCTGTCGTTTCCTCCGATGTCAGTCTTCCCAGTGCCAGCAGCACTCCGCCTCCTGTGCCAAGCCGAGCTAAAGCTccaccccctcctccccctGAGCGCACACCATCCCCAAACTCCCAATCAGCTCCCTCTAAGAAAGGCCCCGCCCCTCAACCCCAGCCCCAGCCAACCACAGCACAGCCCGTCACTCCCCAGCCTCCCCTCGAAGACCAGTCAGAAGCTGAGTGGCCCTCGGCCCCGCCCCCCATTTCCATCAGCCCCACCAGTAGCCCCACCCACAGTTCAGCGTCCGTCCCCATGACGACGGGTGCGGAGTTAATCGAGCTGGTGAGGAAGAACACGGGCCTTAGTTACGAGATGTCGCGTGTTGCCGTGGGCGTGGTCGTCGGGCATCTGCAGACCACCATACCAAGCGCGTCAGCTGACCTGGAGCAGGTCCTGCTGTCATTGGTCGAGAGCAAGGATCTGAGTACAGCGCTGCCGCAGGGGCAGGTGTGTCATGATGAGCAGAGGTTGGAGGTGATATTTGGGGATCTGGCTCGACACCGGGACGACTCACAGCAGCGCAGCTGGGCTCTGTATGAGGATCACGAGCTCATAGCCTGCTACCTGGAGGAACTGCTGCAGATACTGactgATGCAGATCCAGAGGTGTGTAAGAAAATGTGCAGAGCCAATCACTCAGAGCcagttctctctctcgtctcctACTATCAAATGGAGCACAGGGTGTCTCTgcgtctgctgctgctgaaggtGTTTGGAGCGATGTGTGGTTTAGATGGGTCCCTGATCTCCACGCTGATCAACTCCATCCTGCCCATGGAACTGGCCagagacctgcagaccaacacACAGGagCATCAGAAGATGTGTTACACTGCTCTGGTTCTGGCCATGATCTTCTGCATGGGCGAGCAGGTGCCCTACCGGCATTATGaCCACCTGAACTCCAGTTTTATCCAGTTTCTGCTGGACGTGATTGAGGACGGTATTTCTTCTGATCCCACTGAACAGCTACCTGATCTCTTCATCAACGTGCTGCTGGCCTTCAACCTGCACCTTACAgtGCCGGAGGATAACATGGTGATGCAGACGCTGATAAAGAGACACAATGTAAAGACTCTGTCTGAGAAGATTCTGCTGCTGCTCAACAGAGGAGAggaccctgtgtgtgtgtttaagcacGAGCCCCCGGCTCCTCACTCCGTCCTGAAGTTCCTGCAGGACGTTTTTGCCAGTCGGGACACCGGGGACATTTTCTATCACACTGATATGATGGTGATGATTGACATCGCTGTACGGCAGATCTCAGATCTGTCTCCAGGAGATAAGctGAGGATGGAGTATCTCTCTCTGATGCACGCTATAATGCGCTCCACCGACTACATGCAGCACCAGCACCGTCTGCCGGACCTGCAGGCGACGCTGCAGAGGATTCAGGGAGAGGAGGACGACCCCGGAGAGGAGGAGAGCGCCACCACCGCCCGGCAAATGGACAAACTCATAGTTCAGCAAATTTACAAAGAGTTTCCTCAGATCAGCAAGAACTGAGGGCTCTGTACATAATGGCTGATGGAGCATGCTCCAGAGAACGCCCTTATAAAGAGGGAACAAGGGTACAATACAGGAGGCCAATAAGAATTACTCTAAATTAggagaagaaatgaaaaaaaaaataataataataatttgagttTAGGTTTTAGTAGTTCTGCATGGTACTCTTCATCTCCTGATGAAACGTTTGTTAAACTTGAGAGCAAAAACatgcagtaaatacagtaacttGTGCACAGTGTGTTGCAGTTGTAAACTAAACACGAAGTGAAACTGAATTTGGatttgaatgaataaataatagttACTAAAATA

Function

symbol description
nckipsd Predicted to enable Arp2/3 complex binding activity and myosin binding activity. Predicted to be involved in endocytosis. Orthologous to human NCKIPSD (NCK interacting protein with SH3 domain).

NR:

description
PREDICTED: NCK-interacting protein with SH3 domain

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682534.1 True 2835 mRNA 0.55 14 18434535 18450707

Neighbor

gene id symbol gene type direction distance location
slc25a20 slc25a20 coding downstream 5776 18417224 ~ 18428759 (-)
LOC103030071 LOC107395124,LOC106516167,LOC105904852,LOC108254707,LOC107679546,LOC107711958,LOC107591783 coding downstream 21117 18401223 ~ 18413418 (-)
necap2 necap2,LOC108414094 coding downstream 132303 18289441 ~ 18302232 (-)
crocc LOC108415825 coding downstream 145790 18245810 ~ 18288745 (-)
atad3a atad3a,LOC103357928 coding downstream 225839 18194807 ~ 18208696 (-)
LOC103038600 LOC108444099 coding upstream 5882 18456589 ~ 18467052 (-)
LOC103029431 LOC108254710,LOC108444098,LOC103385834 coding upstream 32708 18483415 ~ 18488577 (-)
LOC103038294 LOC108444096 coding upstream 37970 18488677 ~ 18491448 (-)
cacna2d2 cacna2d2,cacna2d2b,LOC107655410 coding upstream 349222 18799929 ~ 18844551 (-)
acy1 acy1,LOC107575257,LOC107655273 coding upstream 399193 18849900 ~ 18861224 (-)
G191003 NA non-coding downstream 56341 18377640 ~ 18378194 (-)
G190997 NA non-coding downstream 67325 18362081 ~ 18367210 (-)
G190990 NA non-coding downstream 73780 18310476 ~ 18360755 (-)
G190988 NA non-coding downstream 186161 18240094 ~ 18248374 (-)
G190958 NA non-coding downstream 204873 18228990 ~ 18229662 (-)
G191025 NA non-coding upstream 51795 18502502 ~ 18505375 (-)
G191078 NA non-coding upstream 220756 18671463 ~ 18675406 (-)
LOC111195398 NA non-coding upstream 252698 18703405 ~ 18721914 (-)
G191095 NA non-coding upstream 273324 18724031 ~ 18726062 (-)
G191077 NA non-coding upstream 278132 18728839 ~ 18729268 (-)
LOC103041510 LOC108414096 other downstream 119198 18311452 ~ 18315337 (-)
mrpl20 mrpl20 other downstream 221005 18139363 ~ 18213530 (-)
LOC111195395 NA other downstream 258371 18167240 ~ 18176164 (-)
G190788 NA other downstream 1214755 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 1240788 17181114 ~ 17193747 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 257612 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 446802 18897509 ~ 18902285 (-)
LOC103036492 card19,LOC108443695 other upstream 1060614 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 2648640 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 2979309 21430016 ~ 21436453 (-)

Expression


Co-expression Network