LOC103029431 (LOC108254710,LOC108444098,LOC103385834)


Basic Information

Item Value
gene id LOC103029431
gene name LOC108254710,LOC108444098,LOC103385834
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18483415 ~ 18488577 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682536.1
aggcGGTGTAAATGGCGGACATTTTGTTGGGCTATACGGTTTGCCGATAACAGCGAGCTTAACCTCAGGGTGGGAGACCGGAAAAAAACTCGCCTGGCCTCAAACAGAAAGAAATGGCAGCAATTCGTAAGAAGCTGGTGATCGTTGGAGATGGGGCTTGCGGAAAGACCTGCCTTCTCATCGTCTTCAGCAAAGACCAGTTCCCTGAAGTTTATGTGCCTACAGTGTTCGAGAACTACGTGGCCGACATCGAGGTGGATGGCAAACAGGTTGAGCTTGCCTTGTGGGATACAGCCGGCCAGGAGGACTACGATCGGCTACGTCCGCTCTCCTATCCCGACACTGACGTCATTCTGATGTGCTTCTCCATCGACAGCCCAGACAGTCTTGAGAACATTCCAGAAAAATGGACTCCTGAAGTGAAACACTTCTGTCCCAACGTCCCCATCATCCTGGTGGGCAACAAGAAGGACCTGCGTAACGATGAGCACACCCGCCGCGAGCTGGCCAAGATGAAGCAGGAACCAGTCAAACCAGAGGAGGGCAGAGACATGGCCAACCGAATCTACGCCTTCGGATACATGGAGTGCTCTGCCAAGACGAAGGACGGCGTGAGGGAGGTGTTCGAAATGGCCACCAGGGCGGCGCTGCAGGCCAGAAAGGGCAAGAAGGGCACCAAATGCCTCCTACTGTAAACGGACAGGACTCTGCGCTGGTTCTGTGCTGCagggagagagggggggagCCGAGCCCCCCCCGGTTCCTCGGCCTGAAATGACTGTGCACAACCATAAAccgctttttattttatgtctttTAAAACGAAACCAGTACAGCTAGATatggaagttttttttgtcagtatttAAAGAGGCAGATAAGGAGTAATGCTGTTTATTGTACCTTTATACACATAACGATTGAATTTGCCATATTAACTCATACCGAGCCAATGGTAAAATGGGTCTGCCAGTTGACATTCGAGTCGTGTCTGCTTAACCGAGCTACTTGTATTGGTGCGTTTCGTCATTTCACTGTGACCGATAGCCCATGCAGTTATTTCGGATTATAAATATGCAATGAAGACGAAAAAGATGATCAGGACCAATGTGCAATACAGAAAATACACGCGTTCGTTTATTTTCTGGAATGCATACACTTGGACAAGACTTGAAACTTCTTCTTTGTTTCCTTTggtgttttttcttctctttctttctttatttctttctttctttcaaaacaaacagaaacctAATTTGGTATctttgtgtattaaaaaaactttttaagaa

Function

NR:

description
PREDICTED: transforming protein RhoA-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04513 RHOA; Ras homolog gene family, member A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682536.1 True 1295 mRNA 0.47 5 18483415 18488577

Neighbor

gene id symbol gene type direction distance location
LOC103038600 LOC108444099 coding downstream 16363 18456589 ~ 18467052 (-)
nckipsd nckipsd coding downstream 32708 18434535 ~ 18450707 (-)
slc25a20 slc25a20 coding downstream 54656 18417224 ~ 18428759 (-)
LOC103030071 LOC107395124,LOC106516167,LOC105904852,LOC108254707,LOC107679546,LOC107711958,LOC107591783 coding downstream 69997 18401223 ~ 18413418 (-)
necap2 necap2,LOC108414094 coding downstream 181183 18289441 ~ 18302232 (-)
LOC103038294 LOC108444096 coding upstream 100 18488677 ~ 18491448 (-)
cacna2d2 cacna2d2,cacna2d2b,LOC107655410 coding upstream 311352 18799929 ~ 18844551 (-)
acy1 acy1,LOC107575257,LOC107655273 coding upstream 361323 18849900 ~ 18861224 (-)
abhd14a abhd14a,LOC107586929,LOC107756017,LOC107704435,LOC107593054 coding upstream 373988 18862565 ~ 18870053 (-)
LOC103032073 NA coding upstream 383674 18872251 ~ 18893531 (-)
G191003 NA non-coding downstream 105221 18377640 ~ 18378194 (-)
G190997 NA non-coding downstream 116205 18362081 ~ 18367210 (-)
G190990 NA non-coding downstream 122660 18310476 ~ 18360755 (-)
G190988 NA non-coding downstream 235041 18240094 ~ 18248374 (-)
G190958 NA non-coding downstream 253753 18228990 ~ 18229662 (-)
G191025 NA non-coding upstream 13925 18502502 ~ 18505375 (-)
G191078 NA non-coding upstream 182886 18671463 ~ 18675406 (-)
LOC111195398 NA non-coding upstream 214828 18703405 ~ 18721914 (-)
G191095 NA non-coding upstream 235454 18724031 ~ 18726062 (-)
G191077 NA non-coding upstream 240262 18728839 ~ 18729268 (-)
LOC103041510 LOC108414096 other downstream 168078 18311452 ~ 18315337 (-)
mrpl20 mrpl20 other downstream 269885 18139363 ~ 18213530 (-)
LOC111195395 NA other downstream 307251 18167240 ~ 18176164 (-)
G190788 NA other downstream 1263635 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 1289668 17181114 ~ 17193747 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 219742 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 408932 18897509 ~ 18902285 (-)
LOC103036492 card19,LOC108443695 other upstream 1022744 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 2610770 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 2941439 21430016 ~ 21436453 (-)

Expression


Co-expression Network