LOC103035977 (tkta,LOC108443693,LOC107578334,LOC107582382,LOC107743250,LOC107694867)


Basic Information

Item Value
gene id LOC103035977
gene name tkta,LOC108443693,LOC107578334,LOC107582382,LOC107743250,LOC107694867
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 19575698 ~ 19604021 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682575.1
acacacacacacacacacacttatacacaggTTGGGAGAGTAgctgctctttctctcctctctctctctcagtctgtgtCCCGCTGTTCGTTCTGCAGTTATGGAGGATTATCATAAACCGGATCAGGCCACGGTGCAGGCGCTCCGCAACATCGCCCAGCGCCTCCGCATCAACTCCATCAGGGCCACCACTGCAGCCGGCAGCGGGCATCCCACATCATGCTGCAGCGTGGCCGAGATCATGTCTGTCCTCTTCTTCCACACCATGAAGTACCGACCAGACGACCCCAAAAACCCCAACAATGACCGCTTCGTCCTGTCCAAGGGTCACGCTGCCCCGGCTCTGTACTCGATGTGGACAGAGACCGGCTTCCTGAAGGAGAGTGACCTGGTCAGTATGTGCCAGGTAGACTCCGCCCTGGAGGGCCACCCCACACCTaagCAGCAGTTTGTGGATGTGGCCACTGGGTCTCTGGGTCAGGGACTGGGCGTGGCCTGTGGAATGGCCTACAGTGGGAAATACTTCGATAAGGCCAGttacCGTGTGTACTGTCTGCTGGGTGATGGGGAGATGTCTGAGGGCTCTGTGTGGGAGGCCATGGCCTTTGCCTCCTACTATCAGCTGGACAACCTGGTGGCCATCCTGGACATTAACCGTCTGGGCCAGAGCGATCCGGCGCCCCTGCAGCACCACATGGAGAAGTACCAGAGACGCTGTGAGGCCTTCGGATGGCATGCGATTATTGTTGATGGACACAGTATTGAGGAGTTGTGTAAGGCCTTGACTCAGCCTCGCCACCAGCCCACCGCCATCATCGCCAAGACCATCAAGGGAAAAGGCATTCCGGtggcgGAGGATAAGATGGGATGGCACGCGAAGGTTCTGCCGAAGGACATGGCGGAAGGTGTGATCAGAGACCTGCAGAGCCGCATCCTCAACAGCAACAAGCGCATGTACCCGGCCACGCCCACCGAGGATGCGCCGCCCGTCAGCCTGCGCAACGCCCGCATGCCCAGTGCTCCCAGCTACAAACCAGGAGAGAAGGTTTCCACCCGTAAAGCGTACGGGATGGCTCTGGCCAAGCTGGGGCGCTATAACGAGCGTGTGGTAGCCATGGACGTGGACACCAAAAACCTAACCTACTCAGAGATCTTTAAGAACGAACACCCGAACCGCTTCGTGGAGTGCTACAGCGCAGAGCAGAACATGGTGAGCGTAGCTACCGGCTGTGCCGCCCGTGAGAGGAACATCGTGTTCGCCAGCGGACTCGCCACCTTCTTCACCCGCGCCTACGACCAGATCCGCATGGCCACCATCTCCGAGAGCAACATCAACCTGTGCGGCTCTCACTGCGGCCTGTCAATAGctgAAGATGGACCCGCCCACATGGGTCTGGAGGACATGTCTATGTTCAGGACTCTTCCCACTGCTACTGTTTTCTACCCCAGTGACGGCGTTTCCACTGAGAAAGCTGTAGAGCTGGCGGCTAACACCAAGGGAATTTGTTACATCCGGACCAGTCGCCCTGAGAGCTCCATCATCTACAACAGCAATGAGGACTTCCATGTTGGACAGGCCAAGGTGGTGTGTCAGAGTAAGGATGATCAGGTGACGGTGGTGGGCGCTGGAGTGACCCTGCATGAAGCTCTCGCTGCAGCCGAACAGCTAAAGAAAGAGAGGATCTACATTCGCGTGATCGACCCTTTCACCATCAAACCCCTCGACACCAAGACCATCATGGATCACACTCGCAGCACCAAGGGCCGCATCCTGACTGTAGAGGACCACTACTACGAAGGTGGTCTCGGGGAGGCCGTGAGTTCTGCCCTGGTGAACGAGTCCGGCTTCGTCCTGCAGCGTCTCGCCGTCCCCCATGTCCCCCGCAGCGGCAAAATGTCCGATCTGCTCAAGATCTACGGCATCGACCGGGAATCCATTGTCCAGGCCGTCAGGAAGATGGTCAGCAGCTCGGCCAATGCCAAGTAGACCCACCACCtgtagccccgcccacctcaCCCAAACCAGCCAGTCAGAAGCCAAATCCACTAAGACAGTCGCTGTGTCCAAAATGGTACcctaatcactttttttttacaggcgaAAAATCAAGAGCACTAAAAGGAAGGTGTGAAGGTTTTGAGACAGAACCCAAAATAGTGCACTATTTAGGGAACAGGTTGCAATTTGAGACAAAGCCCAAATAGTGTGCTGAACAGCAAATAGGGTCTCATTTGAGACACAGCCCAAAATAacccactatatatatattagaacagGGTGTAATCTGAGATTAAGattgtaatttaaaacattaataagcacataaatagaaagaacaacagtgaaaataactttttaacataTCAGTtcagt

Function

symbol description
tkta Predicted to enable thiamine pyrophosphate binding activity and transketolase activity. Predicted to be involved in pentose-phosphate shunt, non-oxidative branch and ribose phosphate biosynthetic process. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human TKT (transketolase).

NR:

description
PREDICTED: transketolase-like

GO: NA

KEGG:

id description
K00615 E2.2.1.1, tktA, tktB; transketolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682575.1 True 2374 mRNA 0.55 14 19575698 19604021

Neighbor

gene id symbol gene type direction distance location
LOC103037097 LOC108443694,LOC107743251,LOC107694868,LOC107578651,LOC107696460 coding downstream 11522 19534667 ~ 19564176 (-)
LOC103044255 wnk2,LOC108443687,LOC107743253,LOC107694869 coding downstream 89621 19424040 ~ 19486077 (-)
LOC103044542 NA coding downstream 158190 19391793 ~ 19417508 (-)
LOC103044861 NA coding downstream 184798 19358413 ~ 19390900 (-)
LOC103037635 NA coding downstream 229391 19315818 ~ 19346307 (-)
LOC103043652 LOC108440521 coding upstream 181553 19785574 ~ 19792464 (-)
LOC111195449 NA coding upstream 283058 19887079 ~ 19891108 (-)
LOC103042725 LOC103042725 coding upstream 308854 19912875 ~ 19917461 (-)
traip traip coding upstream 639704 20243725 ~ 20253893 (-)
LOC103041184 LOC107715794,LOC107659533,LOC107575741,LOC107685972 coding upstream 898287 20502308 ~ 20622494 (-)
G191338 NA non-coding downstream 13147 19532946 ~ 19562551 (-)
G191337 NA non-coding downstream 146738 19418231 ~ 19428960 (-)
G191339 NA non-coding downstream 247076 19327966 ~ 19328622 (-)
G191329 NA non-coding downstream 322609 19252876 ~ 19253089 (-)
G191328 NA non-coding downstream 326245 19249204 ~ 19249453 (-)
LOC111195401 NA non-coding upstream 6363 19610384 ~ 19618060 (-)
G191357 NA non-coding upstream 16155 19620176 ~ 19620410 (-)
LOC103035771 NA non-coding upstream 17279 19621300 ~ 19623690 (-)
G191402 NA non-coding upstream 143679 19747700 ~ 19757762 (-)
G191418 NA non-coding upstream 176150 19780171 ~ 19784989 (-)
LOC103036492 card19,LOC108443695 other downstream 47118 19511321 ~ 19528580 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 673413 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 776783 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 1260361 18311452 ~ 18315337 (-)
LOC111195395 NA other downstream 1399534 18167240 ~ 18176164 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 1495326 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 1825995 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 1906903 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 2242948 21846969 ~ 21851642 (-)
alas1 alas1,LOC106583798 other upstream 2745326 22349347 ~ 22362458 (-)

Expression


Co-expression Network