traip (traip)


Basic Information

Item Value
gene id traip
gene name traip
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 20243725 ~ 20253893 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682591.1
ATGTAGTGTTTGAACTGAGCGCGGGGGCTCTGGAGCGGTTCCGATaaagaaacagcagcagtaatAATACAGATTATAAACCCGGttttcaacaaaaatggaggACTAGCGGAAGTTCTGCGGGTTTTACAGCTTCCAGGTGATTCAGGCACGGAGTTACGATCctgaccaccatgcccatccgGGCGTACTGTACCATTTGCTCGGATTTCTTTGACCACTCAAAGGATGTGGCTGCGATTTACTGTGGCCACACCTTCCACTATGCGTGTCTGCTTCAGTGGTTCCAGTCTGCTCCCACTAAAACCTGCCCGCAGTGCAGGAAACAGGTCAGCTCGAGACACATCATCAATAAGCTGTTTTTTGATATCGCGCCAGAAGATGAAGGATCTGCGGCCGATCCAGAAAGCTTACAGAACGAGCTGGACAGAATGAAAGCAGCTTTTTCTGAAAAGGagagAGGCTGGCGGGAGAAACAGAAAGCGGCTGATAATCTGAGGGAGACGATCGAGAAACAGAGAGCCGACCTGGaaagagtgaggagagagaTAGGAGAGAAAGAAATGCTCTGTACTACGCTTCGAAAGCAGATGCAGTATCTGGAGAGCCAGCACAGGGAAAGCGAGGCGGCTAAAGAGGAGGCCAAACGACTCCGAGTCAAAATGAAAACCTATGAGAGTCTGAATGCAGTCCTGCAGGGCCAGCGGGCGGAGGTGGAGGCCATGATTTCAGACATGGGCGTCGGCCAGTCAGCTGTGGAACAACTGTCCATTTACTGCGTCTCTCTGAAAAAagaATATTACAATCTAAAAGGAAGCCTCAGATCCTCCAATGACATGTGTGAGAAGCTGAAAAGGGAACTGTTCTCCTCGAATAATAAGttgcaGAAAGCGACATTTGAGATGAACAGAGCAAAGGAGGACATGAAGGCCCTGCAAAAGGATCTCACTAATGCAGACAAAGAAATCACAAGTCTGAAGAAGAAGGTGGAGATCCTGCAGAAGACCCTGAGCACGCCCACCCGCACCAACGAGGCCATCAGCCGACTCGTGTTTGAAAGtcctGCTCCTCTTGAGCTGAAGCCCCCGCACCTGCACCAGCCTGCAGACGGTCAGGACATTGACCTTAACGTGACCTTTGACATCAGCACACCTGAGCAGGTGGAGAAAAAGCCTGTTACAGTTCCTGCAAAGAAGATGCGTCTGGATCCGGCACAATCTTCATCCAAACAGAGTGAAAACATTTTTACGAGTAAGAACTCTCATACTAAAGAAGAGGAGGATTCCATGTTTCGCAACTCGTTGCTGTTTAGGAAGAAGATGTTTGGCAGCATGCTCGACCCACACAGCAAACCTGGCTCTGTGAGAACAGGCTACGACGGGCTCGGAGGAAGAACCAAATTTATTCAGCCTTCCCCCCTGGCTGAGATCAGACCCCTCATCATGAAGGCCAAGAGGAAGAAGGTGTCGAGACCAGCTCCCAACAAACTGTCCGTTAACCTGCCCACACTGGACGGCTTCCTGGAGTGAAGCTCCCAAACCCCAGCTGGAGCTCACTGTGACTCTTAAGGGAGCTTGGGTTGGTTATTAGGGCTGTGCAATACAAAAGGGCGGAGTTCTAGTATTGTAAGTACAGCTGTagtatgcaaaagtttgggcaatTCTGGCCAAATCACATGCTTTACATTTTCCTAATGTTTCAGGTGTAAATAAGTTAATGCATAATCTACTGTGAGCAAACTTCTTAACACTTCTGAAGCACAAGCCCTGTTCATTTGCTTACTACATTATAAACTAGTTTCCCTGATGCGGATTAAGCATAGatttggactacacagcattaattacagtaattcagttgaaactgtgaaactcttatattatatagatgtactaca

Function

symbol description
traip Predicted to enable metal ion binding activity. Human ortholog(s) of this gene implicated in Seckel syndrome 9. Orthologous to human TRAIP (TRAF interacting protein).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRAIP

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11985 TRAIP, TRIP; TRAF-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682591.1 True 1897 mRNA 0.48 16 20243725 20253893

Neighbor

gene id symbol gene type direction distance location
LOC103042725 LOC103042725 coding downstream 326264 19912875 ~ 19917461 (-)
LOC111195449 NA coding downstream 352617 19887079 ~ 19891108 (-)
LOC103043652 LOC108440521 coding downstream 451261 19785574 ~ 19792464 (-)
LOC103035977 tkta,LOC108443693,LOC107578334,LOC107582382,LOC107743250,LOC107694867 coding downstream 639704 19575698 ~ 19604021 (-)
LOC103037097 LOC108443694,LOC107743251,LOC107694868,LOC107578651,LOC107696460 coding downstream 679549 19534667 ~ 19564176 (-)
LOC103041184 LOC107715794,LOC107659533,LOC107575741,LOC107685972 coding upstream 248415 20502308 ~ 20622494 (-)
LOC103032600 arl8b,LOC103032600,LOC107095653,LOC108435203,LOC105934196,LOC108255114,LOC107385792,LOC103386496 coding upstream 541520 20795413 ~ 20807451 (-)
bhlhe40 bhlhe40 coding upstream 562704 20816597 ~ 20821524 (-)
itpr1 itpr1 coding upstream 583225 20837118 ~ 21072418 (-)
LOC103031955 NA coding upstream 839757 21093650 ~ 21097240 (-)
G191507 NA non-coding downstream 552 20181887 ~ 20243173 (-)
LOC111195458 NA non-coding downstream 90666 20148618 ~ 20153059 (-)
G191491 gnai2,LOC105909893,LOC103358732,LOC101079922,LOC104930488,LOC103465228,LOC102228806,LOC104958439 non-coding downstream 97102 20069689 ~ 20146623 (-)
G191484 NA non-coding downstream 175454 20010478 ~ 20068271 (-)
LOC111195457 NA non-coding downstream 357041 19880925 ~ 19886684 (-)
G191518 NA non-coding upstream 15728 20269621 ~ 20271923 (-)
G191557 NA non-coding upstream 239417 20493310 ~ 20525681 (-)
G191647 NA non-coding upstream 703096 20956989 ~ 20957556 (-)
G191653 NA non-coding upstream 837927 21091820 ~ 21092235 (-)
G191664 NA non-coding upstream 851547 21105440 ~ 21106822 (-)
LOC103036492 card19,LOC108443695 other downstream 715145 19511321 ~ 19528580 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 1341440 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 1444810 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 1928388 18311452 ~ 18315337 (-)
LOC111195395 NA other downstream 2067561 18167240 ~ 18176164 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 845454 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 1176123 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 1257031 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 1593076 21846969 ~ 21851642 (-)
alas1 alas1,LOC106583798 other upstream 2095454 22349347 ~ 22362458 (-)

Expression


Co-expression Network