LOC103031955


Basic Information

Item Value
gene id LOC103031955
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 21093650 ~ 21097240 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682601.1
GCTGGTGCTGCTGCTCCTCTAGTTGGTGTGTGTAAGGTAGCCGGGTGTGCGCGGTGTTGTTGGGGCCGGGGTCAGTGTTGGAGCTCCTCGGGTCGGGCCGGTTTTCGGGGCCGGTCTCCGGGTGCGGTGAGCGGCTGCGGTGTGCAGCATGCTGCGCTCATTCGGTGCGGATTTAAGCGGCGGTCTGGAGAATATTCCGGTTTTAATAGAGAGCGGTGTGAGTCAGGACGCTTTGTCCAAACTGCAGTACACTCCGGAGAACGTACAGGGTCCAGGCTGTGATGTTGACCCGAGTGAGGTGACCCTGCCCGGCTGTGTTTGCCGAGCACAGTCCTGCGTGCCGGACGGCTGCCCGTGTCTGTGCTTCGGTCAAGCCTACACCAGCGAGGGCCGACTGGTCGAGCGTCAGGCGGACGAGGCCGACCTGCTCCACAGCCAGCCTGTGTTCGAGTGTAACGTCCTGTGTGAGTGCAGCGAGTCCTGCCAGTCTCGCCTGGTCCAGAACGGCCTGCGGGTGCAGCTGGGCGTCTTCCGTACTCAGGACCGAGGCTGGGGGGTTCTGGCTCTGGAGCCGATCCCGCGGGGCTGCTTCGTGTGTGAGTACGCCGGGGAGGTGATTGGGTTCCAGGAGGCGCGGCGGAGACAGCTCTCTCAGACTTCCAGCGACATGAACTATATCATCTCCGTCCGGGAGCACGGGGGAGAGAGGAGGTTCATCCAGACGTTTGTAGACCCGGCATCTGTGGGCAACGTGGGACGCTTCCTGAACCACTCCTGCCAGCCTAACCTAGTGATGCTGCCCGTACGTGTGCATTCACTAGTGCCCAGGTTGGCGCTGTTCGCCAGCCGAGACGTGGAAGTGGGTGAGGAGCTCACGTTCGACTACTCTGGAGGACATGAttcaaatacacaaacacagatgGACGCTGGAGCTTCTCAGAAGAAACCATGTCACTGTGGAGCTCCAAACTGCAGTGGATTTTTACCTTTAGATATTTCAGTCCTGTGCTGATGTGAGGAGAGTgttgaaatgcacaaaaaaataaaaaacacacattttatatcatttaaTTTATCAAAAAATGTCCTGGAACCAAAGTAATAAAGCAGACTCATGTTTAATAcctccacccccatgcttcacagttagGATGAAGTTCTTATTTAGGAAAGCAGTGCTTGTGTTCTGTGCCTCTGCCAAATCAGAAATTGATGAGACaatatgaaacatttaaaataaaacctgGTTTCTAGCacttatttgtatatttaacaCTTAAATGGAGGAGAATGGAGGTTCTCAAAGGAAAGAATGTCAGTGTGGAACAGCGaactgcactgttttttttttttttttttaagctttagaCATGTCCTGCCCTGATGtgataaaagtgttaaaatgcacagattatcaaaaaaacacgcactatataattatatatttgtcAAAAAATGTCCTGGACCCAAAGTAGACCCAAAATATGATACATCCACCCTCATGCTTCACAGTTTGAAGACAAAGTTCTTATATGGAAAAGCAGTGTTTGTGTTCTGTGCCTCTGTGAGAATTTTTTATACACCCCCAAATCAGAAATTGATAGGACAGTATGAGACATTGAAAGTAAAACccagtttcttacatttactttaactcTTAATTGATTACAGACAGAATATAGCTTCTCAGAGGAAAGAATGTCAGTGTGgaacaacaaactgaactggGGTTTTACCTTTAGACATGTCCTTATAGACTCTTTTATAGACAGTTCATTTAGATAAATGTATTATTCTATGGTTTTCATGCAGATTGTTCAACTGATGTCTCAGAAATCATAATTCAAAGTCATTTTATTCCATATTAAGTAAACTGTTGAACCACTGCTACTGGTTGACACAATATAACAAACTTTTAAATTAGGTTGTGCATTGACTTGTTGACAAAAACAAGGACATCCTTAGAAAAGATGTGGTCCTGAAAACAGCAAATGCTGCTTTAAGATCtcaatgtacttttctgcataaAATCTGCTTTATTAAAGTGCACTGACACCTTGACAAAACATGGACTTGATGCTGATGAAAGTGattctgtccaatgaaaaataattatctccatttttgtctaatttttttttttagtttattacataatttgaacatacaaTCTATCCCCTCCAATGTGTTggaatttcttgatgaatggactagagacttaataaaataaacaggttCTTCAATGAA

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0043229 intracellular organelle cellular_component
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K11433 SETMAR; [histone H3]-lysine36 N-dimethyltransferase SETMAR

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682601.1 True 2247 mRNA 0.45 2 21093650 21097240

Neighbor

gene id symbol gene type direction distance location
itpr1 itpr1 coding downstream 21232 20837118 ~ 21072418 (-)
bhlhe40 bhlhe40 coding downstream 272126 20816597 ~ 20821524 (-)
LOC103032600 arl8b,LOC103032600,LOC107095653,LOC108435203,LOC105934196,LOC108255114,LOC107385792,LOC103386496 coding downstream 286199 20795413 ~ 20807451 (-)
LOC103041184 LOC107715794,LOC107659533,LOC107575741,LOC107685972 coding downstream 471156 20502308 ~ 20622494 (-)
traip traip coding downstream 839757 20243725 ~ 20253893 (-)
gpx1 gpx1a,LOC103031640,LOC108435306,LOC108255192,LOC107577558,LOC107718196,LOC103360354 coding upstream 15240 21112480 ~ 21114923 (-)
LOC103026802 NA coding upstream 245462 21342702 ~ 21348384 (-)
LOC103027815 LOC108424594,LOC106566152 coding upstream 315449 21412689 ~ 21428618 (-)
itga7 itga7 coding upstream 345048 21442288 ~ 21498063 (-)
LOC111195406 NA coding upstream 410812 21508052 ~ 21508261 (-)
G191653 NA non-coding downstream 1415 21091820 ~ 21092235 (-)
G191647 NA non-coding downstream 136094 20956989 ~ 20957556 (-)
G191557 NA non-coding downstream 567969 20493310 ~ 20525681 (-)
G191518 NA non-coding downstream 821727 20269621 ~ 20271923 (-)
G191507 NA non-coding downstream 850477 20181887 ~ 20243173 (-)
G191664 NA non-coding upstream 8200 21105440 ~ 21106822 (-)
G191691 NA non-coding upstream 76232 21173472 ~ 21239522 (-)
G191787 NA non-coding upstream 181763 21279003 ~ 21279752 (-)
G191791 NA non-coding upstream 206278 21303518 ~ 21370779 (-)
G191812 NA non-coding upstream 428919 21526159 ~ 21528036 (-)
LOC103036492 card19,LOC108443695 other downstream 1565070 19511321 ~ 19528580 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 2191365 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 2294735 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 2778313 18311452 ~ 18315337 (-)
LOC111195395 NA other downstream 2917486 18167240 ~ 18176164 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 2107 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 332776 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 413684 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 749729 21846969 ~ 21851642 (-)
alas1 alas1,LOC106583798 other upstream 1252107 22349347 ~ 22362458 (-)

Expression


Co-expression Network