LOC111195407


Basic Information

Item Value
gene id LOC111195407
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 21572367 ~ 21583063 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682609.1
GGAAGGGAAGTGGTTTCTGCAGAGGTGCTTTGCTGATTGTTGCTCATGGCGCTGCATCCTGCTGCTGAAGCTCTGATCTGAACCAGGACTGGCAGCGCCCCAGTCTCTGCACCCTACATCATCCTGTTACACAGCAACCCTCAACACACCACCCTGTAACACAGCACTGCGTCAGGGCATTTTTTTTAGccctatatattattattatcagcgCATTTCTCAGTTTTGGATATGACGATGAACTGCAGCGGCCAGACAAGTGGCTTTGGAGTTCTCTGTGGTTCTCATGCTCTGTGGGTTCTGTTTGGAGTAGTCAGCGGGGTTCTGGTCTTCTCGCTGTGCTGGAATATTCTCTGCTGTGTCCAAAAACACTGGGCAGCAAGAGGGAAGGCCTTTCTGCCCCGATTCAGgagaagCATCAGCCTGAAACGCAGTGAGATGGAGGATAACCCTATCTATGGAAACATTACCTACACACACAGCAGTAAGCCAGGAGATCACAGTGAAGAACGTCCCGCTCGGGCGTTCTCTGCTGGACGGGAGTGCTACGCCAACCTGACCCTGAAAGTTCCTAAAGTACCCTCTGGCCGAAGTTCTCCAGCCCCTCAGATTCAGTACTCAGACGTGATGACTGTTAATCAGGATCCAGTGGAACCAGAACCCGACGGGGAAGAGGACCCCATAGAGAAGGATACGTGTTCCATGATCTCCGAGCTCTACGCCTCTGTGGACGCAGAACACATCAAGACCAAGAAGCAGGACAACAACGAACCGTACGCCAACCACGTCTGAGAACCTGAGAACTGTCAGATCAGAGAGACACTGTTATAATACGAATGAACTGTATAAACATAACAATCCTAACTGTGGTACATAgtcccatttctcattttatatttcataggGGCGCTCAAAAGTGTCCTCAGTGCTCCCTTTAGTAAAGACAGCATGAATGCAGACTTAGCAAGAAGGCGGGGTTTGGGCATCCAACTCCGCCCACATGCAGCCCAGCCTCTTGTTACTCCACAAGCCACGCCCTTCTTACATCCTAGGCCGTGGCTGTGCCCGAAACTGATTTCTATTTACTTCTAGGTATTAATAAGTCTGTCGGCCATTTTTGTTGAGGTGGGATTAGAATGTAATTTTGAGGAACTATGAACttcaaaatacatcacaaattacagtaaaaaatcatatcattagctacattagctaagAGCTACCTTTAATCGTTACTAAGCAACCTAACTTGGAAGTACTGGAGCCTATCGAGAGCCTGGGGTTgccaaataaaacatgtttcaaATCCAAAAAAGagtacatattattattattattaaccatATTTCATTATGTTATATAAAGCTATCACAAATAACTTATAAAACCAAAAGTGAATTAATTACTAACTGATATTGTTTGTCATGGCAAAATAAAAGCAGCGAAATCCTCCATAAAGTAGGAACAGGGAATGTATCTCATGACAGGGATCTGCCCCCATATATTAAACTGTACAAAATTGTATTTAACATTGTCAGTCTCAGGACTGAGAAGaattaatatgtattaaaaattaGAAAGTCATAATGACaatgttattgtttttgtaatgcAGTGAATAATTAAATAGCACATAATGTTTTTACTGCTTTACAGTCAGTATCTgtattattacaccaaataaactatattttatACAGTCAACACAGAAAAAACAATGATAGTGATTTCAAATATATTCTTCTAATTATAGACTAAATatatgaaaacaaaataatagtCTACAAAACCTTATAACCATTACTGATGAAACCACCCATTAGGACTGTGACTAATTGTGTTGAATGGAGAAGACTTTCTAGGTCTAGGTTCCAGCCGTACACTCTACAGTTCACAACCAATCACTGACAACTGTGACATAAGTTAGAACTTGTTTAGCCCATATCTTCAGTGGAAAAAATACGACGTACATCATAATAATGAATGACGGGATAATCAGTGTCTGTGTCATGCAGTGTCTGTGTCATGCTACACAAGTAGACGTAAATTAAGTtgtgtttctctgcattatatgcatatttaatatatttttgataaaGTGCCTTAAACGAACAAGAGCACAGCCTCAAGACTCATTCGGATGAACTTTCAGAATATTTAGAATCCAGAATATAGGGTATTTActttactgatcattttttaaattctgtcTGTGATCTATGATCTCTGACTTAGCTGTGTTTCCCCCAAATGTATCGGCTTCTGTTTACACCAGACCCACACTGACCTCTCAGGAATTGTAACGGATCTCTTGCAGAGTTCTGCTATATGACAGCTTGTGCACATCAACAGGGTTTGTGAGTTTCATAATTTCTtcaataaaacatcaataaaaatgtGGACATATACTTTTCATAAA
>XM_022682610.1
GAAGTGGTTTCTGCAGAGGTGCTTTGCTGATTGTTGCTCATGGCGCTGCATCCTGCTGCTGAAGCTCTGATCTGAACCAGGACTGGCAGCGCCCCAGTCTCTGCACCCTACATCATCCTGTTACACAGCAACCCTCAACACACCACCCTGTAACACAGCACTGCGTCAGGGCATTTTTTTTAGccctatatattattattatcagcgCATTTCTCAGTTTTGGATATGACGATGAACTGCAGCGGCCAGACAAGTGGCTTTGGAGTTCTCTGTGGTTCTCATGCTCTGTGGGTTCTGTTTGGAGTAGTCAGCGGGGTTCTGGTCTTCTCGCTGTGCTGGAATATTCTCTGCTGTGTCCAAAAACACTGGGCAGCAAGAGGGAAGGCCTTTCTGCCCCGATTCAGgagaagCATCAGCCTGAAACGCAGTGAGATGGAGGATAACCCTATCTATGGAAACATTACCTACACACACAGCAGAGATCACAGTGAAGAACGTCCCGCTCGGGCGTTCTCTGCTGGACGGGAGTGCTACGCCAACCTGACCCTGAAAGTTCCTAAAGTACCCTCTGGCCGAAGTTCTCCAGCCCCTCAGATTCAGTACTCAGACGTGATGACTGTTAATCAGGATCCAGTGGAACCAGAACCCGACGGGGAAGAGGACCCCATAGAGAAGGATACGTGTTCCATGATCTCCGAGCTCTACGCCTCTGTGGACGCAGAACACATCAAGACCAAGAAGCAGGACAACAACGAACCGTACGCCAACCACGTCTGAGAACCTGAGAACTGTCAGATCAGAGAGACACTGTTATAATACGAATGAACTGTATAAACATAACAATCCTAACTGTGGTACATAgtcccatttctcattttatatttcataggGGCGCTCAAAAGTGTCCTCAGTGCTCCCTTTAGTAAAGACAGCATGAATGCAGACTTAGCAAGAAGGCGGGGTTTGGGCATCCAACTCCGCCCACATGCAGCCCAGCCTCTTGTTACTCCACAAGCCACGCCCTTCTTACATCCTAGGCCGTGGCTGTGCCCGAAACTGATTTCTATTTACTTCTAGGTATTAATAAGTCTGTCGGCCATTTTTGTTGAGGTGGGATTAGAATGTAATTTTGAGGAACTATGAACttcaaaatacatcacaaattacagtaaaaaatcatatcattagctacattagctaagAGCTACCTTTAATCGTTACTAAGCAACCTAACTTGGAAGTACTGGAGCCTATCGAGAGCCTGGGGTTgccaaataaaacatgtttcaaATCCAAAAAAGagtacatattattattattattaaccatATTTCATTATGTTATATAAAGCTATCACAAATAACTTATAAAACCAAAAGTGAATTAATTACTAACTGATATTGTTTGTCATGGCAAAATAAAAGCAGCGAAATCCTCCATAAAGTAGGAACAGGGAATGTATCTCATGACAGGGATCTGCCCCCATATATTAAACTGTACAAAATTGTATTTAACATTGTCAGTCTCAGGACTGAGAAGaattaatatgtattaaaaattaGAAAGTCATAATGACaatgttattgtttttgtaatgcAGTGAATAATTAAATAGCACATAATGTTTTTACTGCTTTACAGTCAGTATCTgtattattacaccaaataaactatattttatACAGTCAACACAGAAAAAACAATGATAGTGATTTCAAATATATTCTTCTAATTATAGACTAAATatatgaaaacaaaataatagtCTACAAAACCTTATAACCATTACTGATGAAACCACCCATTAGGACTGTGACTAATTGTGTTGAATGGAGAAGACTTTCTAGGTCTAGGTTCCAGCCGTACACTCTACAGTTCACAACCAATCACTGACAACTGTGACATAAGTTAGAACTTGTTTAGCCCATATCTTCAGTGGAAAAAATACGACGTACATCATAATAATGAATGACGGGATAATCAGTGTCTGTGTCATGCAGTGTCTGTGTCATGCTACACAAGTAGACGTAAATTAAGTtgtgtttctctgcattatatgcatatttaatatatttttgataaaGTGCCTTAAACGAACAAGAGCACAGCCTCAAGACTCATTCGGATGAACTTTCAGAATATTTAGAATCCAGAATATAGGGTATTTActttactgatcattttttaaattctgtcTGTGATCTATGATCTCTGACTTAGCTGTGTTTCCCCCAAATGTATCGGCTTCTGTTTACACCAGACCCACACTGACCTCTCAGGAATTGTAACGGATCTCTTGCAGAGTTCTGCTATATGACAGCTTGTGCACATCAACAGGGTTTGTGAGTTTCATAATTTCTtcaataaaacatcaataaaaatgtGGACATATACTTTTCATAAA

Function

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0042110 T cell activation biological_process
GO:0030217 T cell differentiation biological_process
GO:0048884 neuromast development biological_process
GO:0042611 MHC protein complex cellular_component
GO:0042612 MHC class I protein complex cellular_component

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682609.1 True 2419 mRNA 0.40 6 21572367 21583063
XM_022682610.1 False 2404 mRNA 0.40 6 21572367 21583057

Neighbor

gene id symbol gene type direction distance location
arfgap1 arfgap1 coding downstream 1716 21550755 ~ 21570651 (-)
LOC111195406 NA coding downstream 64106 21508052 ~ 21508261 (-)
itga7 itga7 coding downstream 74304 21442288 ~ 21498063 (-)
LOC103027815 LOC108424594,LOC106566152 coding downstream 143749 21412689 ~ 21428618 (-)
LOC103026802 NA coding downstream 223983 21342702 ~ 21348384 (-)
LOC103033505 agap2 coding upstream 15064 21598127 ~ 21630334 (-)
cdk4 cdk4,LOC107747701,LOC106565448,LOC107701179,LOC107567936 coding upstream 64042 21647105 ~ 21663599 (-)
LOC103023479 tnnc1,LOC103023479,LOC108424583,LOC106571909,LOC103385538 coding upstream 422371 22005434 ~ 22012959 (-)
tmbim6 tmbim6,LOC106583271 coding upstream 607761 22190824 ~ 22205696 (-)
avil avil coding upstream 624059 22207122 ~ 22229088 (-)
G191812 NA non-coding downstream 44331 21526159 ~ 21528036 (-)
G191791 NA non-coding downstream 201588 21303518 ~ 21370779 (-)
G191787 NA non-coding downstream 292615 21279003 ~ 21279752 (-)
G191691 NA non-coding downstream 332845 21173472 ~ 21239522 (-)
G191664 NA non-coding downstream 465545 21105440 ~ 21106822 (-)
G191827 NA non-coding upstream 126853 21709916 ~ 21711285 (-)
G191858 NA non-coding upstream 250079 21833142 ~ 21833495 (-)
G191870 NA non-coding upstream 277063 21860126 ~ 21924848 (-)
G191880 NA non-coding upstream 374778 21957841 ~ 21958432 (-)
G191884 NA non-coding upstream 383446 21966509 ~ 21966712 (-)
elmo2 elmo2,LOC106583331 other downstream 27536 21510924 ~ 21544831 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other downstream 135914 21430016 ~ 21436453 (-)
brk1 brk1,BRK1,LOC106565571 other downstream 469149 21099347 ~ 21103218 (-)
LOC103036492 card19,LOC108443695 other downstream 2043787 19511321 ~ 19528580 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 2670082 18897509 ~ 18902285 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 263906 21846969 ~ 21851642 (-)
alas1 alas1,LOC106583798 other upstream 766284 22349347 ~ 22362458 (-)
amhr2 NA other upstream 1126486 22709549 ~ 22722905 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other upstream 1203100 22786163 ~ 22803642 (-)
G192251 adipor1,LOC107749488,LOC107385668 other upstream 1471570 23054633 ~ 23058805 (-)

Expression


Co-expression Network