avil (avil)


Basic Information

Item Value
gene id avil
gene name avil
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 22207122 ~ 22229088 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682619.1
ATCTCATTCCCCAACTCTAAACTAGTTAATCTCAGACAAACTCCCACTCAGAACGAGTCTGTCTCAAATAAatccccactctgaatgagtttatCTCAAacaacccccacccccacactGAAACCCCACCTCAATTCTGAATATTATGTGAAGTTGTCTGTAAATAATGTCACTGTTCCTGATTTTGCAGGTGATTTGAATGCGACTCAGTGCTGACATTGGCTTGATTTGCCTTCTGACTCTATCGCTGCTTCTGTCTTCCTCCTGATTGGATCAACAGATAGATGGGGTCCAGTTCATGCAAATGTAATCAAATCCAGACTCTGAGACTCTGTtacagaggaggaagaggaggaggaagagccGGCGGTGACACACTGCTCACCCGCCTGTGCCTAGTGAGGAGCGCCCATCAGAAGACTCACCTCGACTTTTGTCCAATTAAGATCTGCAATCAAACATTTCAAATCTCAGGCCAGGATCTAGAACCCACTAATGAACCATGGAGCAGACCTTCAGAGCCGTCAATCAAACCCCCGGCATCCTCATCTGGAGAATCGAGAAAATGGAGCTGGTTCTGGTTCCGGAAAAATCATATGGGAACTTTTATGAGGGTGACTGCTACGTTCTGCTGTGTACTAAAAAAGTGGGCGGGTCCCTGTCGTACGACATCCACTACTGGATTGGTTCTGAGTCGTCTCAGGATGAGCAGGGGGCTGCTGCGGTGTACACCATCCAGCTGGATGACTTCCTGGGCTCAGCTCCGGTCCAGCACCGGGAGGTCCAGCACCACGAGTCCAGCTCCTTCTGCGGCTACTTCAAACAGGGCATCATataTAAAAAGGGTGGAGTGGCGTCGGGAATGAGGCACGTTGAGACGAACAGCTCAGATGTTCAGAGGCTGCTGCAGGTGAAGGGGAAGAGGAAGGTGACAGCTAAAGAGgTGGAGATGAGCTGGAACAGCTTCAATCTGGGTGATGTTTTTCTGTTGGACATCGGAAAGACCATTATCCAGTGGAACGGGCCAGACAGCAACAAACAGGAACGAATGAAGGGGATGCTGCTGGCGAAGGATATTCGTGATCGTGAGCGAGGTGGCAGGGCTGAGATCGGGGTGATCGAGGGCGATGCTGAGAAGAATTCTCCTCTTTTAATGGAGGCTCTGACCAGTATCATCGGTGAGCGACCCGCTAAACTGCCCAGCGGGACGTCAGACGACCAGGCTGACCAGCAGCAGATGGCCCAGGTCACTCTCTTCCATGTCTCTGATGCTGATGGAGAAATGAAGGTCATGGAGGTTGCCACCAGACCGCTGGTACAGGATCTGCTCAACCATGATGACTGCTATATCCTGGATCAGGGCGGAGTTAAGCTGTTCGTGTGGAAGGGGAAGCGAGCCAACAAGGCCGAGAGACAGGCGGCCATGTCCAGAGCTCTGGAATTCATTAAGCTAAAGGGTTATCCTCACACCACGAACGTGGAGACGGTGAACGACGGCGCTGAGTCTGCACTATTCAAGCAGCTTTTCCAGAGCTGGACCGTCCAAAACCAGACCAAGGGCCTGGGCCACACCCACACTGTGGGCAGAGTGGCTAAAGTCTCTCAGGAGAAGTTTGATGCCTCTCAGATGCATGTGATGCCTGAAGTAGCAGCTCAGAACCGCATGGTGGATGATGGCAGTGGACAGCTCCAGATCTGGAGGATTGAAAATCTGGAGCTGGCTGAAGTCGACCCAAAAACGTACGGCTATTTCTATGGGGGCGACTGCTACATCATCCTCTACACCTACGAGGTCAACAGGAAGAAGAGCTACATTCTGTACATCTGGCAGGGGCGACATGCCACCCAGGATGAGCTGGCAGCTAGTGCATTCCAGGCAGTAACTGTTGATCAGCAGTATGGTGGGGAGCCCGTCCAAGTGAGGGTCACTATGGGCAAAGAACCCCGTCACTTCATGGCCATTTTTAAAGGCAAGCTGGTCATTTTTGAGGGTGGGACCTCCAGAAAAGGGGGCTTGGACCCAGAACCCCTCGTCCGTCTATTTCAGATCAGTGGGACAGATTCTACCAACACTAAAGCTATCGAGGTTCCGGCCCAGGCAGCATCGCTTAACTCAAACGATGTTTTCTTGCTGAAGAATCAGGGGACCATGTACCTGTGGTACGGAAAGGGGTCGAGTGGAGATGAGAGGGCTATGGCTAAGGAGGTTAGCACGGTTCTCGGCCGCGGCTCGTTCTCAGCAGAGATTATGGCTGAGGGTCAGGAACCTGCAGAATTCTGGAACCTTCTAGGTGGAAAGGCACCATATGCCAATGACAAAAGGCTACAGCAGGTCGTTCAGGATCATCAGCCCCGCCTCTTCGAGTGCTCCAATAAAACGGGCCGCTTCATCGTTACGGAGGTGACAGACTTCACTCAGGATGACCTCATTGAAGATGATGTGATGCTTTTGGACACATGGGATCAGGTTTTCCTCTGGATTGGAAATGAAGCAAATGAAGTGGAGCGGAAAGAGTCTGTGGTCACGTGTCAGGAATACCTGCGGACCCATCCTGGAGCCCGCGACTGCGACACGCCCATTCTGCTGGTGAAGCAGGGGTTTGAGCCCCCCACATTCACCGGCTGGTTCACCGCCTGGGACCCTACCAAGTGGAGTGATGGGAAGACATACGAGCAGCTGAAGGAGGAGCTGGGGGAAGTGACATCACTGGAAATAGTGACAGAGATGAAGGTGAACCAGGTGAGTGAGGAGAATAAGACCTACCAGCTGTTTCCTTTTGAGGATCTGATCAATAAAAACGCAGACGAGTTACCGAAAGGAGTCAACCCATCTGAGCGGGAGAAACATCTCTCAGATGAAGATTTCCAGTTCATATTTGGAATGTCCAAAAATGAGTTTTCCAGTTTGCCGCAGTGGAAACAGCTAAATAtcaagaagaaaaacaagatgttttaaaatatgactCTGAGTACATATTATAACGCTACTAGATCagaaaaaacttgtaaacttgtAGAAACATATGTAACTACTGTAACTACCAATGGTTGCAAAGGTTGAGTACAACAAATGtgccaaataaaatgtaagtgactttttgtataaaaaaaaataaaacataaagaaaatgcagaaccacttaaaaaatattttttcacatgaaAGTTTAGAGTAGTAATTACACTTAATTTAAATAAGCATCATCAGCAGGCTAACTTTGTATTTGCTCTGTATAGATAAAACAGactggaaaaaaatcaaatgaagATGTAAAAATGGTGCTGAATCTATTAAACATCTCGTGAAAatga

Function

symbol description
avil Predicted to enable actin filament binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in actin filament severing; actin polymerization or depolymerization; and barbed-end actin filament capping. Predicted to act upstream of or within actin filament capping and cytoskeleton organization. Predicted to be active in actin cytoskeleton and cytoplasm. Human ortholog(s) of this gene implicated in nephrotic syndrome type 21. Orthologous to human AVIL (advillin).

NR:

description
PREDICTED: advillin

GO: NA

KEGG:

id description
K08017 AVIL; advillin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682619.1 True 3312 mRNA 0.49 20 22207122 22229088

Neighbor

gene id symbol gene type direction distance location
tmbim6 tmbim6,LOC106583271 coding downstream 1426 22190824 ~ 22205696 (-)
LOC103023479 tnnc1,LOC103023479,LOC108424583,LOC106571909,LOC103385538 coding downstream 194163 22005434 ~ 22012959 (-)
cdk4 cdk4,LOC107747701,LOC106565448,LOC107701179,LOC107567936 coding downstream 543523 21647105 ~ 21663599 (-)
LOC103033505 agap2 coding downstream 576788 21598127 ~ 21630334 (-)
LOC111195407 NA coding downstream 624059 21572367 ~ 21583063 (-)
ctdsp2 ctdsp2,LOC106583267,LOC106565429 coding upstream 8359 22237447 ~ 22247617 (-)
LOC103037062 LOC108424641,LOC106583265,LOC103359365,LOC100304514 coding upstream 30571 22259659 ~ 22284657 (-)
LOC111195450 NA coding upstream 57521 22286609 ~ 22293538 (-)
eef1akmt3 NA coding upstream 68764 22297852 ~ 22303090 (-)
LOC103024753 LOC108424569 coding upstream 231370 22460458 ~ 22639548 (-)
G191898 NA non-coding downstream 204942 21999172 ~ 22002180 (-)
G191884 NA non-coding downstream 240410 21966509 ~ 21966712 (-)
G191880 NA non-coding downstream 248690 21957841 ~ 21958432 (-)
G191870 NA non-coding downstream 282274 21860126 ~ 21924848 (-)
G191858 NA non-coding downstream 373627 21833142 ~ 21833495 (-)
G192005 NA non-coding upstream 28827 22257915 ~ 22258796 (-)
G192009 NA non-coding upstream 78519 22307607 ~ 22309156 (-)
G192012 NA non-coding upstream 113304 22342392 ~ 22342630 (-)
G192014 NA non-coding upstream 136920 22366008 ~ 22366333 (-)
G192120 NA non-coding upstream 178158 22407246 ~ 22441456 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 355480 21846969 ~ 21851642 (-)
elmo2 elmo2,LOC106583331 other downstream 662291 21510924 ~ 21544831 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other downstream 770669 21430016 ~ 21436453 (-)
brk1 brk1,BRK1,LOC106565571 other downstream 1103904 21099347 ~ 21103218 (-)
LOC103036492 card19,LOC108443695 other downstream 2678542 19511321 ~ 19528580 (-)
alas1 alas1,LOC106583798 other upstream 120259 22349347 ~ 22362458 (-)
amhr2 NA other upstream 480461 22709549 ~ 22722905 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other upstream 557075 22786163 ~ 22803642 (-)
G192251 adipor1,LOC107749488,LOC107385668 other upstream 825545 23054633 ~ 23058805 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 1810158 24039246 ~ 24105898 (-)

Expression


Co-expression Network