alas1 (alas1,LOC106583798)


Basic Information

Item Value
gene id alas1
gene name alas1,LOC106583798
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 22349347 ~ 22362458 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682625.1
TGCCCTCTCGTTCGTCCTCAGTGCAGGATAACGGAGAAATAATCCAGATTTACCGCGTTTTAACAACATTTACCATCTAGCGACACCCTTTTCACCCCGGACACTCGAGCTGGAAGAAGATTAGAAGGTTTTCTGCGAGGGAGAGACACTCAACGCTAGGACAATCTGTTATGGACGCTATAATCCGCTGCCCGTTCCTCTCCCGCGTCCCCCAGGCGTTCCTGCAGCAGGCCAGGAAGTCCTTGGTGAGCTACGCGGTGAAATGCCCCGTCATGATGGACCTCGCCTCAAGGCCTCTGGTGCGAGCTGTCTGCTCTTCCTCCACCAGCTTCCAAAAGTCTCAGGACACCGTCAGCAGCACCGAGGAACCAAAAGAGGCACCAAAAATGCCATCCGCTCACCCAACGGTTCCAGCAGGTCAGACTTCCGCCTCCAAGTGCCCGTTCCTGGCTGCTGAGATGGGCCCGAACAGCAGCGTGGTGAGGCAAGCCAGCCTGGAGCTGCAGGAGGACGTGTCCGAGGTCCGAACGGTCCGCAAAGatgtGCCTGCCTCTGAGCTTCAGCCCCTGGTGAATGATGCTAAGACTGGTGGGAACCTGATGAAGAAGCTCATGAAGCAGCGTCCCACGTCTGTCTCTCACCTGCTGCAGGAGAACATGCCCAAAACCATCTCCAACTTCCGCTACGACCAGTTCTTCGAGAAGAAAATCGAGGCGAAAAAGAACGATCACACCTACCGCGTCTTCAAAACCGTGAACCGCCGTGCGACCGAGTTCCCAATGGCGGATGATTATTCGGAATCTCTGAGCAGCAGGAGAGACGTGTCTGTGTGGTGCAGCAACGATTACCTTGGCATGAGTCGCCATCCTCGTGTCGTCCAATCTGTGATGGATACTTTACGAAGGCACGGCTCCGGCGCAGGGGGGACTCGAAATATATCGGGGACGAGTAAATTCCACGTGGCGCTGGAGCACGAGCTGGCGGATCTACACGGGAAGGACGCAGCTCTACTCTTCACTTCCTGCTTCGTGGCGAACGATTCTACGCTGTTTACACTGGCCAAGATGCTGCCAGGATGTGAGATTTATTCGGACGCTGGTAATCACGCCTCAATGATCCAGGGCATCAAGAACAGCGGCGCCAAGAAGTTCATTTTCCGCCATAACGACGTCCAGCACCTGCGTGAGCTTCTGGAGAAGTCTGACCCGTCCACGCCGAAGATCGTGGCGTTTGAGACGGTGCACTCGATGGACGGTGCCGTGTGCCCGCTGGAGGAGATGTGTGACGTGGCTCATGAGTTCGGGGCAATCACGTTCGTGGACGAGGTTCACGCTGTGGGACTGTACGGTGCAAGAGGAGGTGGAATCGGAGACCGGGACGGAGTCATGCACAAGATGGACATCATCTCTGGAACACTTGGTGAGCGTTTGGGTTGTGTTGGAGGCTACATCGCCAGCACCAGCGCTCTGGTGGACACAGTTCGCTCGTACGCCGCCGGCTTCATATTCACTACGTCCCTCCCGCCCATGCTGCTGTCCGGCGCCCGCGAGTCCATCCAGGTCCTGAAGAGCGAGGAAGGCCGCATGCTCCGCCGCAAACACCAGCGCAACGTCAAGCTGCTGCGCCAAATGCTGATGGACTCCGGTCTCCCTGTCGTCCACTGCCCCAGTCACATCATTCCGGTCAGGGTGTCGAATGCGGAAAAGAACACAGAGATCTGTGACATCATGATGAGCCGCCACAACATCTACGTCCAGGCCATCAACTACCCCACCGTGGCTCGCGGGGAGGAGCTCCTGCGCATCGCCCCGACGCCACACCACACCCCCCAGATGATGCAATATTTTGTTgATAAGCTACTGCAGACCTGGAAGGAGGTGGGTCTTCCGCTGAAGCCGCACTCCTCGGCGGAGTGCAATTTCTGCCAGCAGCCGCTGCACTTCGAGCTGATGAGCGAGCGCGAGAAATCCTACTTCAGCGGCCTCAGCCATCCCATATCAGCCTGCGGCTAACCACGCCCCTTCACCCCGCACACATTCCAACAAGCTGTCTGCGATCATGTTGGTCTTTTATAAGTGTAACTTATTCAGATTCATATTCCATGTATCAGATTCTATATGAAATAAATTGTGCAAATTTAACGTTT
>XR_002651628.1
GCCCTCTCGTTCGTCCTCAGTGCAGGATAACGGAGAAATAATCCAGATTTACCGCGTTTTAACAACATTTACCATCTAGCGACACCCTTTTCACCCCGGACACTCGAGCTGGAAGAAGATTAGAAGGTTTTCTGCGAGGGAGAGACACTCAACGCTAGGACAATCTGTTATGGACGCTATAATCCGCTGCCCGTTCCTCTCCCGCGTCCCCCAGGCGTTCCTGCAGCAGGCCAGGAAGTCCTTGGTGAGCTACGCGGTGAAATGCCCCGTCATGATGGACCTCGCCTCAAGGCCTCTGGTGCGAGCTGTCTGCTCTTCCTCCACCAGCTTCCAAAAGTCTCAGGACACCGTCAGCAGCACCGAGGAACCAAAAGAGGCACCAAAAATGCCATCCGCTCACCCAACGGTTCCAGCAGGTCAGACTTCCGCCTCCAAGTGCCCGTTCCTGGCTGCTGAGATGGGCCCGAACAGCAGCGTGGTGAGGCAAGCCAGCCTGGAGCTGCAGGAGGACGTGTCCGAGGTCCGAACGGTCCGCAAAGatgtGCCTGCCTCTGAGCTTCAGCCCCTGGTGAATGATGCTAAGACTGGTGGGAACCTGATGAAGAAGCTCATGAAGCAGCGTCCCACGTCTGTCTCTCACCTGCTGCAGGAGAACATGCCCAAAACCATCTCCAACTTCCGCTACGACCAGTTCTTCGAGAAGAAAATCGAGGCGAAAAAGAACGATCACACCTACCGCGTCTTCAAAACCGTGAACCGCCGTGCGACCGAGTTCCCAATGGCGGATGATTATTCGGAATCTCTGAGCAGCAGGAGAGACGTGTCTGTGTGGTGCAGCAACGATTACCTTGGCATGAGTCGCCATCCTCGTGTCGTCCAATCTGTGATGGATACTTTACGAAGGCACGGCTCCGGCGCAGGGGGGACTCGAAATATATCGGGGACGAGTAAATTCCACGTGGCGCTGGAGCACGAGCTGGCGGATCTACACGGGAAGGACGCAGCTCTACTCTTCACTTCCTGCTTCGTGGCGAACGATTCTACGCTGTTTACACTGGCCAAGATGCTGCCAGGATGTGAGATTTATTCGGACGCTGGTAATCACGCCTCAATGATCCAGGGCATCAAGAACAGCGGCGCCAAGAAGTTCATTTTCCGCCATAACGACGTCCAGCACCTGCGTGAGCTTCTGGAGAAGTCTGACCCGTCCACGCCGAAGATCGTGGCGTTTGAGACGGTGCACTCGATGGACGGTGCCGTGTGCCCGCTGGAGGAGATGTGTGACGTGGCTCATGAGTTCGGGGCAATCACGTTCGTGGACGAGGTTCACGCTGTGGGACTGTACGGTGCAAGAGGAGGTGGAATCGGAGACCGGGACGGAGTCATGCACAAGATGGACATCATCTCTGGAACACTTGGAAAGGCGTTTGGGTTGTGTTGGAGGCTACATCGCCAGCACCAGCGCTCTGGTGGACACAGTTCGCTCGTACGCCGCCGGCTTCATATTCACTACGTCCCTCCCGCCCATGCTGCTGTCCGGCGCCCGCGAGTCCATCCAGGTCCTGAAGAGCGAGGAAGGCCGCATGCTCCGCCGCAAACACCAGCGCAACGTCAAGCTGCTGCGCCAAATGCTGATGGACTCCGGTCTCCCTGTCGTCCACTGCCCCAGTCACATCATTCCGGTCAGGGTGTCGAATGCGGAAAAGAACACAGAGATCTGTGACATCATGATGAGCCGCCACAACATCTACGTCCAGGCCATCAACTACCCCACCGTGGCTCGCGGGGAGGAGCTCCTGCGCATCGCCCCGACGCCACACCACACCCCCCAGATGATGCAATATTTTGTTgATAAGCTACTGCAGACCTGGAAGGAGGTGGGTCTTCCGCTGAAGCCGCACTCCTCGGCGGAGTGCAATTTCTGCCAGCAGCCGCTGCACTTCGAGCTGATGAGCGAGCGCGAGAAATCCTACTTCAGCGGCCTCAGCCATCCCATATCAGCCTGCGGCTAACCACGCCCCTTCACCCCGCACACATTCCAACAAGCTGTCTGCGATCATGTTGGTCTTTTATAAGTGTAACTTATTCAGATTCATATTCCATGTATCAGATTCTATATGAAATAAATTGTGCAAATTTAACGTTT

Function

symbol description
alas1 Predicted to enable 5-aminolevulinate synthase activity. Acts upstream of or within neutrophil differentiation. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Is expressed in several structures, including EVL; digestive system; periderm; polster; and pronephros. Orthologous to human ALAS1 (5'-aminolevulinate synthase 1).

NR:

description
PREDICTED: 5-aminolevulinate synthase, nonspecific, mitochondrial isoform X1

GO:

id name namespace
GO:0006782 protoporphyrinogen IX biosynthetic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0003870 5-aminolevulinate synthase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
K00643 E2.3.1.37, ALAS; 5-aminolevulinate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682625.1 False 2146 mRNA 0.56 11 22349347 22362458
XR_002651628.1 True 2146 misc_RNA 0.56 11 22349347 22362457

Neighbor

gene id symbol gene type direction distance location
eef1akmt3 NA coding downstream 46257 22297852 ~ 22303090 (-)
LOC111195450 NA coding downstream 55809 22286609 ~ 22293538 (-)
LOC103037062 LOC108424641,LOC106583265,LOC103359365,LOC100304514 coding downstream 64690 22259659 ~ 22284657 (-)
ctdsp2 ctdsp2,LOC106583267,LOC106565429 coding downstream 101730 22237447 ~ 22247617 (-)
avil avil coding downstream 120259 22207122 ~ 22229088 (-)
LOC103024753 LOC108424569 coding upstream 98000 22460458 ~ 22639548 (-)
LOC103040317 faim2 coding upstream 330618 22693076 ~ 22705489 (-)
LOC103040941 ndrg3,LOC108412994,LOC107655061,LOC107727846,LOC107749481,LOC107562126 coding upstream 377275 22739733 ~ 22782472 (-)
LOC103042162 LOC108412995 coding upstream 443123 22805581 ~ 22840324 (-)
LOC103025695 sulf2a,LOC108412941,LOC107655065,LOC107749484,LOC107685697,LOC107600506 coding upstream 487683 22850141 ~ 22925668 (-)
G192012 NA non-coding downstream 6717 22342392 ~ 22342630 (-)
G192009 NA non-coding downstream 40191 22307607 ~ 22309156 (-)
G192005 NA non-coding downstream 90551 22257915 ~ 22258796 (-)
G191898 NA non-coding downstream 347167 21999172 ~ 22002180 (-)
G191884 NA non-coding downstream 382635 21966509 ~ 21966712 (-)
G192014 NA non-coding upstream 3550 22366008 ~ 22366333 (-)
G192120 NA non-coding upstream 44788 22407246 ~ 22441456 (-)
G192137 NA non-coding upstream 169996 22532454 ~ 22532716 (-)
G192138 NA non-coding upstream 246923 22609381 ~ 22653847 (-)
G192149 NA non-coding upstream 322217 22684675 ~ 22688138 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 497705 21846969 ~ 21851642 (-)
elmo2 elmo2,LOC106583331 other downstream 804516 21510924 ~ 21544831 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other downstream 912894 21430016 ~ 21436453 (-)
brk1 brk1,BRK1,LOC106565571 other downstream 1246129 21099347 ~ 21103218 (-)
LOC103036492 card19,LOC108443695 other downstream 2820767 19511321 ~ 19528580 (-)
amhr2 NA other upstream 347091 22709549 ~ 22722905 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other upstream 423705 22786163 ~ 22803642 (-)
G192251 adipor1,LOC107749488,LOC107385668 other upstream 692175 23054633 ~ 23058805 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 1676788 24039246 ~ 24105898 (-)
G192815 mdm4 other upstream 2849217 25211675 ~ 25217550 (-)

Expression


Co-expression Network