LOC103040317 (faim2)


Basic Information

Item Value
gene id LOC103040317
gene name faim2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 22693076 ~ 22705489 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682646.1
ctagctgcGAATCGAGCAGTAAGAAGTCAGATCTGGAGGAAACGTGAGGAGCAACTTCATCAACATGACTCAGAAAAAGATCGCCCCAGCCGTCAGCACTGTGTCTGGCAATCTGCCGCCCAGTTATGAAGAGGCGAACGCAGGATGCCCCAGCTACTGTTACGCAGACGGTTCATTTTCCTGGGAAGACAAACACATCCGGCGCATTTTTATCAGAAAGGTTTATTCCATCCTGATGCTGCAGCTGCTCGCCACACTCGCCATCGTCTGTGCTTTTACATTCTcGGCATCAGTAAAGTTCTATATCCAAACTCATCCTGGACTCTATTCACTATCCAATTTTCTGTTTCTTGGGACATTTCTGGCTCTGTCCTGCTGTGGAGATTTAAGAAGGCAGTTTCCCTGGAATCTGATTCTGCTGACAGTTTTTACGTTGAGTATGGCCTGCATGCTCGGCTTCATTTCCAGTTTCTATAACTCTCGCTCGGTGGTGCTGTGTTTGGGAATCACGGCTGTAGTTTGTTTTTCCGTTACGATCTTCAGCTTCCAGAGTCGGgtggaCGTGACGTCGTATCAGGGCGTTCTCTTCTCGCTCTGCGTTGTGATGCTGTGCTGCTCGCTGGTGATGGGATTTGTAGTCCCGTTCGGATACGTGCCCTGGATACATGCTATCTACGGGATTGGAGGAGCAATCCTCTTTACTATGTTCCTGGCCTTCGATACTCAGCTGCTGATGGGGAACAAGATGTACGCTATCAGCCCTGAGGAATATATCTTCGCTACTCTGAGTTTATACCTGGACGTCGTCAACCTCTTCACCTTCCTGCTGCAGCTGTTTGGGGGTGGAAGAGAATAAATAAGCCAATATTAACGTTCCTCCATCTGCATCCATAATGTAGGAAGATCTGCAGTCGGGATATTAGGATAGAAGCCTTTCAGTGATTCAGAAGACACAAAAAACCTCAGATCCACCATCGTTCCCCAGTGGACTGTTGCAGACGGTTCTTCCCCTCCTACTGGACTTTATCTGAATGTCTCAGTATTTTCATGTGAAACTGTGGGATCTGAACCTTCGGTAAAGATGATCCAATCCCTCACTTAATCCACAGAGGCGTTTGAGGACTGATTAGTGATGACGTGCTAGTTAGGATCTTTAGAAGCTCAGTTATATGTTGGACAGCAGTCTGAAGCTTCTGTTAGACCCAGTGATAAAAACTacatcggtaccactttaaaataagactacctttataaaggctttataaatg

Function

symbol description
faim2 Involved in regulation of neuron apoptotic process. Acts upstream of or within negative regulation of extrinsic apoptotic signaling pathway via death domain receptors. Located in membrane raft.

NR:

description
PREDICTED: protein lifeguard 2

GO: NA

KEGG:

id description
K24205 TMBIM, LFG; protein lifeguard

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682646.1 True 1268 mRNA 0.47 12 22693076 22705489

Neighbor

gene id symbol gene type direction distance location
LOC103024753 LOC108424569 coding downstream 53528 22460458 ~ 22639548 (-)
eef1akmt3 NA coding downstream 389986 22297852 ~ 22303090 (-)
LOC111195450 NA coding downstream 399538 22286609 ~ 22293538 (-)
LOC103037062 LOC108424641,LOC106583265,LOC103359365,LOC100304514 coding downstream 408419 22259659 ~ 22284657 (-)
ctdsp2 ctdsp2,LOC106583267,LOC106565429 coding downstream 445459 22237447 ~ 22247617 (-)
LOC103040941 ndrg3,LOC108412994,LOC107655061,LOC107727846,LOC107749481,LOC107562126 coding upstream 34244 22739733 ~ 22782472 (-)
LOC103042162 LOC108412995 coding upstream 100092 22805581 ~ 22840324 (-)
LOC103025695 sulf2a,LOC108412941,LOC107655065,LOC107749484,LOC107685697,LOC107600506 coding upstream 144652 22850141 ~ 22925668 (-)
timm17a timm17a,LOC107727855,LOC107554688,LOC106582745 coding upstream 234841 22940330 ~ 22945009 (-)
lmod1 NA coding upstream 246235 22951724 ~ 22959046 (-)
G192149 NA non-coding downstream 4938 22684675 ~ 22688138 (-)
G192138 NA non-coding downstream 39229 22609381 ~ 22653847 (-)
G192137 NA non-coding downstream 160360 22532454 ~ 22532716 (-)
G192120 NA non-coding downstream 251620 22407246 ~ 22441456 (-)
G192014 NA non-coding downstream 326743 22366008 ~ 22366333 (-)
G192145 NA non-coding upstream 29602 22735091 ~ 22736242 (-)
G192235 NA non-coding upstream 233432 22938921 ~ 22939154 (-)
G192237 NA non-coding upstream 245518 22951007 ~ 22951326 (-)
G192232 NA non-coding upstream 255758 22961247 ~ 22962809 (-)
G192240 NA non-coding upstream 325163 23030652 ~ 23031070 (-)
alas1 alas1,LOC106583798 other downstream 330618 22349347 ~ 22362458 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 841434 21846969 ~ 21851642 (-)
elmo2 elmo2,LOC106583331 other downstream 1148245 21510924 ~ 21544831 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other downstream 1256623 21430016 ~ 21436453 (-)
brk1 brk1,BRK1,LOC106565571 other downstream 1589858 21099347 ~ 21103218 (-)
amhr2 NA other upstream 4060 22709549 ~ 22722905 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other upstream 80674 22786163 ~ 22803642 (-)
G192251 adipor1,LOC107749488,LOC107385668 other upstream 349144 23054633 ~ 23058805 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 1333757 24039246 ~ 24105898 (-)
G192815 mdm4 other upstream 2506186 25211675 ~ 25217550 (-)

Expression


Co-expression Network