LOC103041805 (gem,rem1,LOC108411381,LOC107727768,LOC107655086,LOC107727184,LOC107685743,LOC107554936)


Basic Information

Item Value
gene id LOC103041805
gene name gem,rem1,LOC108411381,LOC107727768,LOC107655086,LOC107727184,LOC107685743,LOC107554936
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 23648266 ~ 23660292 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682677.1
TATCTAAACAGCTCAAATCTGAGGTAAAACTGAGAGAAAAACTATAATTCTGAGGTAAAACTGAGATAAAAGCAGACATTGTTTGTAAAACTGAGAGAAAAGCTGaaattctgaggtaaatctgaGAGAAAAGCTGAAATTCTGAGGTAAAACTGAGATACAAGCAGATATTTTGAGGTAAATCTGACAGAAAACCAACCCAGTCTGACGGAAACCCGTTGAAATCTGAGGAAAAGTTACCGGAAGGCGGTGAAATCTGGGAGCTCACCGGGTCCAGCCGTGACAGTCGCCGCGGTCGGAGCTGACTGGAGCGCCGCGCTGGGGATGGAGCAGAGCGGGGAGGAGTAGCTACTGCCCCCGGTCCACCTCACCTCACCGCCCCGGCTGACCCCGTACTGCCACCCGCGCCCACACATGGCTCTACCTATATGCACACGGCCGTAAAATGACGCTGAACACGGAGAGAGAGGGTAAGGAAGCGCTGCGGAGACGAGCGAGCACTCCAATACCCTCGTCTCACCAGCCTGGGCCGAGAGGGAGAACGCTGCCTGCTGAGTCCCGCCACCCTCCACTCGTCCAGTCTGCCTCCTATCAACCTGGGGACAAGAACGTCCACCTGCAGGCCAACTGGTCCTCAGACTCTGAGGAGTCGGACAGCTCTGGAGCTGAGTGTCTCTACCGGGTAGTCCTGTTAGGAGACCACGGCGTGGGCAAGTCCAGCCTCGCCAGCATATTCGCTGGAATACAGGAAAAGGATGCACACCATCACATAGGAGAAGACACATACGAGAGAACGCTGACGGTGGACGGAGAAGAGACCACCCTCGTTGTAATGGATACATGGGAAACAGAGAAGCAGGAGGAGGATGAGAAGTGGGTTCAGGATTACTGCATGCAGGTGGGCAACGCTTATGTCATTGTTTACTCCATCACTGACCGCAGCAGCTTTGAGAGCGCGTCAGAGCTGCGCATCCAGCTGCGTCGCATCCGCCAGGCTGAGAACATTCCTATCATCCTAGTGGGCAACAAGAGTGACCTGGTGCGCTGTAGAGAGGTGGCTGTGGAAGAGGGCCGAGCCTGCGCCGTAGTTTTCGACTGCAAGTTCATTGAGACGTCGGCCTCACTGCACCACAATGTTCACGAACTGTTTGAGGGCATCGTGAGGCAGATACGCCTGCGGCGGGACAGTAAAGAGACCAACGAGCGTCGCCGCTCCTTCTACAAGCGCAAGGAGAGCATCACCAAGAAGGCCCGCCGCTTCCTTGACAGGCTGGTGGCCAAGAACAACAAGAAGATGGCCCTCAAAGTACGCTCTAAATCCTGCCATGACCTCACCGTGCTGTGAGCTCACTGCTCCGGACctcaccattttttttctccttcttgtTCTGTTCATTCCTGAAAGGTTCAGCTTTTATCTCCAACAAACACTTGGGTTCTggatttgtgtgttttgtgttatttgttatttatttgaacAATCTGAGTGGAGGATTGGACTATGCACCGCTTTCTTTTCACTTTGAGAACTTTTTGAGAATCCTGTTGAGAAAGGTTGGTTAGCTGACCGTGAATCTGAATTTGGATAATCTGGGTATTTCTTAAACCAAagatttgttactttttatatCACTAATGAAGTgggatgtgtgttttttttttatgttgttggaCTTTTATCAGCATTTGCCTTATCATACTGGGGCGACACCTAGGTGAGGTGATCTAACTCGAGtagttgcttgtttttatttctttcatttgaaAAGATAGGCTAAAAATAAACTTGCTGTTTGGCCATGCATTTGCGTGAACATCTGGCTGCATCATGAACATAACTGTTCACGTACTTGCCTATTCGTTGCAGTACTGTGTTACTGGAGGCTTCCAGTGAAGGCCTCCACTTTCCACTGCAGCAAGAACACATCATACTGATGCAGGCAGCCTACGTTATTTTGACCTTGCTGAGTGCCTGTACTGCGCCATACTGTACGTACTGCACACGTCACAGACATACAAATGCCGGTTACACGAGGCAGCCATTATGCATAAGCCACTGTGTCGATAACAGCAAGAATATCTCTAGCCTGAAGGCCCTTTCACATCATGTACAGCTCTCACAAATGTacactctttctgtttctctgctcttttaattattaggagtatatataatattagtgAGGGAAGTTTGCTTCTCAATCCACGGCCTTTCAACTCCAGCCCActacatatttacctcagctcTGCAGTTTTATATTCAGACTGATGATTAGAGTATAAGCCTCTGTGTTCTAATCTAAACAAGATCAGTTGTTCTGCCATATTACAGCAGAGATTTACACAGacagtaaagtaaattaaaacaattaagcaATGTTTCAATCTGTCAGTTTAGGACAAACCTTTAATtcactactcaactaagtaaagaaaaaatactttaaggaataaaaatcagtcaatcagaaaaaatgtaagaactc
>XM_022682678.1
agttaccATCCTCAGAaatcgcaagttaacagcttcccAGATATGCACACGGCCGTAAAATGACGCTGAACACGGAGAGAGAGGGTAAGGAAGCGCTGCGGAGACGAGCGAGCACTCCAATACCCTCGTCTCACCAGCCTGGGCCGAGAGGGAGAACGCTGCCTGCTGAGTCCCGCCACCCTCCACTCGTCCAGTCTGCCTCCTATCAACCTGGGGACAAGAACGTCCACCTGCAGGCCAACTGGTCCTCAGACTCTGAGGAGTCGGACAGCTCTGGAGCTGAGTGTCTCTACCGGGTAGTCCTGTTAGGAGACCACGGCGTGGGCAAGTCCAGCCTCGCCAGCATATTCGCTGGAATACAGGAAAAGGATGCACACCATCACATAGGAGAAGACACATACGAGAGAACGCTGACGGTGGACGGAGAAGAGACCACCCTCGTTGTAATGGATACATGGGAAACAGAGAAGCAGGAGGAGGATGAGAAGTGGGTTCAGGATTACTGCATGCAGGTGGGCAACGCTTATGTCATTGTTTACTCCATCACTGACCGCAGCAGCTTTGAGAGCGCGTCAGAGCTGCGCATCCAGCTGCGTCGCATCCGCCAGGCTGAGAACATTCCTATCATCCTAGTGGGCAACAAGAGTGACCTGGTGCGCTGTAGAGAGGTGGCTGTGGAAGAGGGCCGAGCCTGCGCCGTAGTTTTCGACTGCAAGTTCATTGAGACGTCGGCCTCACTGCACCACAATGTTCACGAACTGTTTGAGGGCATCGTGAGGCAGATACGCCTGCGGCGGGACAGTAAAGAGACCAACGAGCGTCGCCGCTCCTTCTACAAGCGCAAGGAGAGCATCACCAAGAAGGCCCGCCGCTTCCTTGACAGGCTGGTGGCCAAGAACAACAAGAAGATGGCCCTCAAAGTACGCTCTAAATCCTGCCATGACCTCACCGTGCTGTGAGCTCACTGCTCCGGACctcaccattttttttctccttcttgtTCTGTTCATTCCTGAAAGGTTCAGCTTTTATCTCCAACAAACACTTGGGTTCTggatttgtgtgttttgtgttatttgttatttatttgaacAATCTGAGTGGAGGATTGGACTATGCACCGCTTTCTTTTCACTTTGAGAACTTTTTGAGAATCCTGTTGAGAAAGGTTGGTTAGCTGACCGTGAATCTGAATTTGGATAATCTGGGTATTTCTTAAACCAAagatttgttactttttatatCACTAATGAAGTgggatgtgtgttttttttttatgttgttggaCTTTTATCAGCATTTGCCTTATCATACTGGGGCGACACCTAGGTGAGGTGATCTAACTCGAGtagttgcttgtttttatttctttcatttgaaAAGATAGGCTAAAAATAAACTTGCTGTTTGGCCATGCATTTGCGTGAACATCTGGCTGCATCATGAACATAACTGTTCACGTACTTGCCTATTCGTTGCAGTACTGTGTTACTGGAGGCTTCCAGTGAAGGCCTCCACTTTCCACTGCAGCAAGAACACATCATACTGATGCAGGCAGCCTACGTTATTTTGACCTTGCTGAGTGCCTGTACTGCGCCATACTGTACGTACTGCACACGTCACAGACATACAAATGCCGGTTACACGAGGCAGCCATTATGCATAAGCCACTGTGTCGATAACAGCAAGAATATCTCTAGCCTGAAGGCCCTTTCACATCATGTACAGCTCTCACAAATGTacactctttctgtttctctgctcttttaattattaggagtatatataatattagtgAGGGAAGTTTGCTTCTCAATCCACGGCCTTTCAACTCCAGCCCActacatatttacctcagctcTGCAGTTTTATATTCAGACTGATGATTAGAGTATAAGCCTCTGTGTTCTAATCTAAACAAGATCAGTTGTTCTGCCATATTACAGCAGAGATTTACACAGacagtaaagtaaattaaaacaattaagcaATGTTTCAATCTGTCAGTTTAGGACAAACCTTTAATtcactactcaactaagtaaagaaaaaatactttaaggaataaaaatcagtcaatcagaaaaaatgtaagaactc

Function

symbol description
rem1 Enables calcium channel regulator activity. Predicted to act upstream of or within negative regulation of high voltage-gated calcium channel activity and signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in nervous system; neural tube; segmental plate; and somite. Orthologous to human REM1 (RRAD and GEM like GTPase 1).
gem Enables calcium channel regulator activity. Predicted to act upstream of or within negative regulation of high voltage-gated calcium channel activity and signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human GEM (GTP binding protein overexpressed in skeletal muscle).

NR:

description
PREDICTED: GTP-binding protein REM 1-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07846 GEM; GTP binding protein overexpressed in skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682677.1 True 2486 mRNA 0.47 5 23648266 23660292
XM_022682678.1 False 2100 mRNA 0.47 5 23648266 23658180

Neighbor

gene id symbol gene type direction distance location
LOC103042624 rbm39,LOC107655082,LOC107727761,LOC107602070 coding downstream 12440 23624910 ~ 23635826 (-)
nfs1 nfs1,LOC107601922,LOC107559867 coding downstream 26148 23609253 ~ 23622118 (-)
LOC103047010 syt6,LOC107727826,LOC107560238,LOC107655078 coding downstream 366247 23208885 ~ 23282019 (-)
LOC103045076 gpr25 coding downstream 485847 23159668 ~ 23162419 (-)
c22h1orf106 LOC108410711,LOC107727857,LOC107655074 coding downstream 503858 23104254 ~ 23144408 (-)
LOC103042306 NA coding upstream 12816 23673108 ~ 23680391 (-)
LOC103041505 pnp4a,LOC103041505,LOC108411380,LOC107727193,LOC107685744,LOC107655042,LOC107727769,LOC107559547 coding upstream 21917 23682209 ~ 23696247 (-)
LOC111195461 NA coding upstream 138466 23798758 ~ 23801417 (-)
LOC103046362 maf1,LOC108425756,LOC108254834,LOC107727190,LOC107685718,LOC107602775,LOC106583327 coding upstream 288239 23948531 ~ 23956337 (-)
zc3h11a NA coding upstream 297536 23957828 ~ 23970167 (-)
G192439 dvl1,LOC108411373,LOC107685713,LOC107560111,LOC107749512,LOC107655081,LOC107727776 non-coding downstream 41235 23602319 ~ 23607031 (-)
G192428 NA non-coding downstream 89090 23544535 ~ 23559176 (-)
G192365 NA non-coding downstream 318953 23329074 ~ 23329313 (-)
G192336 NA non-coding downstream 423663 23216176 ~ 23224603 (-)
G192335 NA non-coding downstream 424897 23215590 ~ 23223369 (-)
G192484 NA non-coding upstream 216343 23876635 ~ 23884538 (-)
G192574 NA non-coding upstream 331904 23992196 ~ 24049734 (-)
G192578 NA non-coding upstream 395002 24055294 ~ 24055585 (-)
G192579 NA non-coding upstream 422512 24082804 ~ 24083308 (-)
G192589 NA non-coding upstream 600342 24260634 ~ 24262555 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 589461 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 844624 22786163 ~ 22803642 (-)
amhr2 NA other downstream 925361 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 1285808 22349347 ~ 22362458 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 1796624 21846969 ~ 21851642 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 378954 24039246 ~ 24105898 (-)
G192815 mdm4 other upstream 1551383 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 2214618 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 3050961 26711253 ~ 26724106 (-)
G193097 NA other upstream 3371371 27031663 ~ 27033089 (-)

Expression


Co-expression Network