nfasc (nfasc)


Basic Information

Item Value
gene id nfasc
gene name nfasc
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 24147827 ~ 24283699 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682685.1
acttatacacacatacttacatacacacacacacacacacacacagagagtctGACAGGGATGCTACCGTACCGAGAGACAGTAGCAGCATCAtcaccaacaaacacacacacacagaaacacacacatatacacacacactgttgtaCTCCAGGAGGCAGTGAGACACAGTGACCCAGACTCACAGGATTTAAACCTGGTATCATAAATCACGGGCTGGCACCGGTTCCGGCGCACGAGGACGGATTTAAGCAGCACCTGAGGATGACCCACGTGTCGGTCCAGATCAGACTCATCACTACTGGATCTCTTGTATGAGAGgTCTTACAATCCTCCATAATTCATAAGGAATTCTTCAGAACTTATCGTgtcAAAACCACTGCCAAAGGTGTGCCACTAAACCAGTACGGAGTGCGGGAGGAGCGGCTAGCCGTTGCCGGACAGAGATGTGGCCGCAGGGGCAGCGGGCGGCCCTGGCTGTGCTGTCAATCATTGTGCTTCTGTGGAGGAAGGCGGCTCCCATCGAAGTCCCTCAAGACCCGAGGATCCTGCAGGACTTGAAACAGCCCCCCACCATTGTGAAGCAGTCTGTGAAGGACTACATTGTGGACCCCCGAGATAACATCATCATTGAGTGCGAGGCCAAGGGGAACCCCGTGCCAACGTTTTGGTGGAGGCGGAATGGGAAGTTCTTCAATGCTGAGAAGGACCCACGCGTGTCCATGCGGAAGCGTTCTGGGACGCTGGAGATCAGCTTCAGGAACGGAGGAAAGCCTGAGGAGTATGAGGGGGAATACCAATGTTTCGCTTTGAACGACTTTGGCACGGCTATATCCAACAAAATCCTGCTACGAGTGTCCAAATCTCCACTGTGGCCTAAAGAGGTTCTGGAACCGGTGGTGGTCACTGAGGGGTCTTCACTGATCCTCCCCTGCAACCCCCCTCCTGGCCTCCCCCCTCCAAACACCTTCTGGATGAACAGCGCCATGATGCCCATCACGCAGGACAAGCGGGTATCCATGGGCCTGAACGGGGACCTGTATTTCTCCAATGTGTTGGCGAGAGACTCGACCATGGACTACAGCTGCAACGCCCGCTTCCTCTTCACCCACACCATCCAGCAGAAGAACCCCTTCAACCTCAAAGTGCTGACCACGCGGAATATTCCAGAATTTGCTCCCAGCTTCCTCTCTCCGTCTGGACTCCACAGCTCCAAGATGGTTCTCCGTGGAGAAGAGCTTCTTTTAGAGTGTATAGCTGCAGGAGTCCCGACTCCTGGCATCAAGTGGTTTAAGAAGGGTGGGGATCTGCCGGAGAGGAAGGTGAAGTTTGAGAGCTTTAATAAAACTCTGCGGATCGTGTCGGTGTCGGAGGAGGATTCTGGGGAATATGTCTGCATGGCCAGTAATAAGATCGGCAGCATCCGCCACTCCATCTCCGTCCAGGTCAAAGCTGCTCCCTATTGGCTCCATAAGCCAACCAACCTGGTGCTTGCCCCGGGTGAGAACGGGCAGCTGGTATGCCTGGCCAGCGGGAACCCCAAACCCACCATCGAGTGGCTGGTGAACGGAGAGACGATCCAGAGTTCGCTTCCGAACCCGAGCAGGGAGGTGGTTGGCGATGCAATCATTTTCAACTCTGTGCAGATTGGCAGCAGTGCTGTGTACCAGTGCAACGCCTCAAATGAACACGGATACCTGCTGGTGAACGCTTTCGTCAGCATACTAGacATGGCACCACGGTTGCTTGGCCCCAAGAACCAGTTGATAAAGGTGATTGAGAACCACCAAGCCTTCTTGGACTGCCCGTTCTTTGGATCGCCTTATCCAGATGTTCGTTGGTTCAAGAATGGCCTTGGCATCGTTCTGGATGGTGTGAAATACAGGCTACATAATAACGGTACTCTGGAGATCAAGCGGGCTCGGCCTGAAGACCAGGGGACGTACACTTTTGTTGCCAGCAACATGCTGGGCAAGGCTGAGGaccaagtccgtttggaagtgAAGGAACCAACACGAATTACTCGGATCCCAGAGCACCTGTCTGCCAATCGTGGAAGCCTGGCCCGCTTTGAGTGCAAAATCAAACACGACCATACCCTCCCTGTCACCGTCAGCTGGCTTAAAGATGACAAGCCGCTCCATTTTGGTTGGATGAGCAAGTATAAGAAAGATGAGGAGTCGATGTCAATACCCAACATCAACAGCGATGACGAGGGCACCTACACATGCACAGTTTCTACAGAGCTGGACCAGGATTCTGCCTCTGCCCGCCTTATAGTTTTAGAGGATGATTCCCTGTCTCCCTCATATCCTAGTGCCTTTGCAGACCGTCCTGATCCTCCTCAGGACCTAGAGCTGTCCGACCTATCAGCACGCTCCGTGCGTCTCACCTGGGTCCCCGGTAACGAAAACAACAGTCCTGTCACAGAATTCCTGGTCCAGTATGAAGAGGACCGGTGGAAACCTGGTGAATGGCAGAACCTGTCCAGTTACGCTGGAAACCAGAACTCGGTGAACCTGCAGCTGTCTCCTTTTGTGAACTACCAGTTCAGAGTCATCGCCATCAACAAAGTGGGCCAGAGCCGCCCCAGCCGCCCCTCTGCTCGGTACCAGACCAGTGGATCTCCCCCCGATGTTGCCCCCAGTGGCCTTAAAGGATGGGGCACCAGGAAAAACAACATGGAGATCTCTTGGCAGCCCTTACTGGATACTCAGAGGAACGGGCCTGAATTACGGTATGTTGTGTCATGGAGGCGTAAAGACCATGAGGAGGAGTGGAACAACGTCACCACTACCAGTACAAAGTACGTGGTCAGTGACACTGAGACCTACGTGCCCTACGAGATCAAAATCCAGGCCATCAACGACTTCGGACGAGGTCCGGAATCCAACGTAGTCATTGGCTACTCTGGGGAAGACAaGCCCTCTGCTGCCCCGGCTGATCTCAGGGTGCCGAAGGCCGACAGTACCAAAGTGAACGTGCACTGGGTCCCGGTGGAGCCCAGCTCCATCCATGGAGAGTTTAAAGAGTACAGACTGTACTACCGGCGGGAGGCCAGCCTGGCCAAGGGCGTCAAGGTGACCAAAGAGAAGAAGACGAAAGGCTTCTACAGTGACGTGTCCCAGAACTCCGGCATCCTGACCGACCTGGTTCCCTACAGCAGATACAGCATGTACATGGTTGTCGCCAACAACAAGTTTGAAGGGCCCCACAGTAAAACTGTGGATTTCGAAACCAAGGAAGGAGTGCCAGGAGCTCCGAAGTTCTTCAAGATTGTTCAGAGGAACACAGAGACCATTCACCTGAAGTGGGATAAGCCTGTGGAGCCAAACGGCATTCTGATCGGGTACACTCTCAAGTACAACACAGTTAACGGGACGCAGGTGGGCGGTCAGCAGGTCCAAAGCTTTTTTGCCAACGAGACGGAGCACACCATCCATCTGCCGGACCGCTTCACTCGCTACAAGTTCTACCTGTCCGCCCGGACGCAGGTGGGGTCTGGAGAGGTGTACGCCGAGGAGTCACCTCACTTCGCTAATGAAGAAGACTTTATCACTTCAGtGATCGATGCTACAGACGCCTTGGTGTTCGCAactcctcctccccctctccCCTCGACCACCGTCCCGACTACCACCATTAGTACctcaactactactactgtagcccctactactgctgctacccCTACTACTGCTGCTCCAACTACTGCTCCAACTACTACTGCCACCACACCCGCCACCACTACCTCTACCACCACCACACCCGCCACTCGGCCTGTCACCACCAAGCGGGTGGACATGAACATGCTGGCCCCCAACATAAAGATCTGGAATCTGACCGTGGATGCTAACAGTGACTATGCTAACGTCAGCTGGAAGCACAACTTCCCTGATGACAGCAGCAAGTTTGTGCTAGAGTTCACACTGGACAGTAATGGCTCTGTTAAAAGCGTGGTTGAACACAAGCCCCCCATTAAACTGGCCGGGCTGGCAGCTGGGGCCAAGTACCGCCTGCGGGTATATTCCCACCTGCAGCCCAGCATCACCAGCGAGTATGTCACCTTCGAGACCAGCGAGgctaaCAAGGACCAGGTGGACATCGCCACGCAGGGTTGGTTCATTGGTCTCATGTGTGCCATCGCACTGCTAGTCCTGATCCTGCTCATCGTTTGCTTCATTAAGAGGAGTCGAGGAGGGAAATACCCAGTGAGAGATAAAAAAGACCTACCTTTGGATCCGGTGGACCAGAAAGACCAGGATGGATCATTTGATTATCAGAATGAGAACAGGTCTCTTGAAAGAGAAAGTAGCGACGAGGACAACAAGCCTCTGCAGGGCAGCCAGACGTCTCTGGACGGGAACGTGAAGGAAAGCGACGACAGTCTGGTGGATTACGGTGAGGGCGGCGACGGCCAGTTCAATGAGGATGGATCCTTCATCGGCCAGTACACGGTCAAAAAGGACAAGGAGGAGACAGAGGGCAACGAAAGCTCAGAAGCCACCTCTCCCGTCAACGCCATCTACTCACTGGCATAGAGCCTCCTTCACGTCCCGCCTTCTGGGAACAGCGCCACCTGAAGGCCTGGAGGATACAAATATATGAACCTTTATGCCAATAAACgtcaaaataaagagagaaaagagaaaagtggACACACATTCTACACAAAACACAGAACTATGGGCAGAACGCCTTGTCCCTGTAACAAGGAAAGCTGGTGGAAGTTCGGAACCAAACCCCGCCCCCAAAGCAATCCGAAGGGCAGTTTTCGAGAAGATTTCAGAACAGTGCCTGTGTCCCTGTGCCCCACACAGACTGCAGTATGCCTTTCGGCCAACAGGGGGCACAGTGAAACTTGGGCAACTCCGGACTTTCGAGCATTTTGTgtggcttttttctttttttggttactttttactttatttttaaaaaacccAGACCCGCTTTTACCCTCAAACCCCGCCCCCTGTGTAGCTATAGCATCAAAGAGAAGGAGATAACACAAGGAGCGGCGAAAGCCCTGCGACATATCAACTGTGGGCCGACTCTGTCTGTAACGGATGTCGGCAAATGCGTTTATCATATTGATATTCAGCAACGAAagatcaacttttttttttttacgttccTTTTTTCACAGCCGATAGATgtgtcaaaaaaaagaaaaataaataagagatacATGAATGCTGTAATCAGTGCCGGTGCAGCGGTTCGCCACTGTGCCACTCAAAGCTATGCACTATATATTACCACACAAACGTTCGCTTTCCTTTGAGTCgaaaaatcagtaaaataattgctttttttttctttttctttataaatgttGTCTTgcgtaaaaaaaagtaaaccttAATCTTAACTTTAAGCTAAAATGCTCGTCCCCTTTCCGTCCCTTCCTAGCggatatatgtatatgttctCATTCGCTGCTTAAAAAAGGcttttgcaaaaatattttttcattggctgcagCTTTAGCGATGCCATTATTGCCACAGATATTTTATACTTCTCCCGAAATTTGAGCACCATCACTGAGAAAATGACGAGAAAAGAGACGTTATTTTGAAGCATGGTAGACTTTTAGTGCAAGAGACAATGGATAGGATGAGACGAAGAATTTCTCTCTTTTAGGGGAATCTCCATAACCACAATATTGTATAAGCGTTTTTTTTATAACTGGCACTATACAATATATTAGAATATGAGAAGAATGATAATGGCGATGATGTTGATAATAATACCCTAATGATGATCATGATGACCTCGGGCCCGGTCGCCACCACTTTTTGTAGTACTTGGGCCGAGTCCGCTGTGTATCTACGGTGTGTTTAGGATGACTGCGATGGTGGACGATGAGCGTAGGTGGACTGCCATTAAACGTAAATGTAGAAGCAGCAAACACTGAATGGCTTTCAtaacaaaaaatgagagagGAACAGCCATATGTTTATTTACGTAAATcctcatatatatttattcatgttttcaTGTTGAGCCCATGCTAAACTTCATGATATGTTTCATGATAAGCTTCATGAACCCGACCTATCCATGCTCCGCCCACACATCTGTTGTTTCATAGCAACTGAGAAAGTAAATGAAGAAACTGAATGagatctaataaaaaaaaaaagctaaaaagaaGTCATATCACATATCACACAACTTCAAAAATCAttgtacataatttgaacatttattaatttattgcatttaaaaaattataatttattaaaggtTATTTTGCATGggtatacattttattttattattaattttgtgttgatttgcattatttatttgaattctTTTGAAATGCAAACTTTTCTAAAGTTTTCTAGTAATAAaggaataattaatatttaacgGTCTTGTCAAATGAATCTGgatttgcttttgtttgtttatcatgtTTATCAAATTTGGCCtccagttttgtttttgttttgtttttatttaatctaaaatagtaaaaatttaaatgtaatataatctcaATAATAATTCACTTGAGGAATTCCGTCGCTGTGCTTTGATTTCTGCTATACTGGGCTGTATTGTTCATTAGCATTAGTCAGTAAGGAACTCCTATAGGCCTCCACAGCATGGCAGCCTACATGCAAatgttattttgattattttttttagcatgaaaaaaaaaacaagattggGGTAAACATCAAATAATAACAGACAATATGTGAATCTATCGCCTTTTCCATACATTTAATTcaaatgcaaaatgcaaaaactatTGTGAATTATTTTGTCAGAACTGTTGGCTTCCGCATATTTTTtgtggagttccacagggttcaatTTTAGGACTTATGAAGTTGATGGTAACTTTGAGTGAACATACAGGGTCTAAGGGGTTAAATGGGATTTTGGATCCGCGCTTATGGAAAAGCATTTTGTAAAACCATCTTGTAgctatttacattttcttatatttcttatatttttatgaAGATCCTTATTTGTTCTATATagtttaaaaagtttacatgAATCTTATCCTACTGGCTTGATAGAATACAGtagctttttttatatttgcttaGATCAAACAAAATTATCTgccaataaaaagagaaaaatataag

Function

symbol description
nfasc Predicted to enable protein binding activity involved in heterotypic cell-cell adhesion. Predicted to be involved in myelination and peripheral nervous system development. Predicted to act upstream of or within several processes, including nervous system development; protein localization to juxtaparanode region of axon; and protein localization to paranode region of axon. Located in plasma membrane.

NR:

description
PREDICTED: neurofascin isoform X5

GO: NA

KEGG:

id description
K06757 NFASC; neurofascin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682685.1 True 7121 mRNA 0.47 35 24147827 24283699

Neighbor

gene id symbol gene type direction distance location
LOC103040944 LOC108425718 coding downstream 120782 24015546 ~ 24027045 (-)
LOC103040645 chia.2,chia.3,LOC108425699,LOC107555079,LOC107685745,LOC107727181,LOC107655977,LOC107727762 coding downstream 145879 23994623 ~ 24001948 (-)
LOC103040327 LOC108425717 coding downstream 159628 23980543 ~ 23988199 (-)
zc3h11a NA coding downstream 177660 23957828 ~ 23970167 (-)
LOC103046362 maf1,LOC108425756,LOC108254834,LOC107727190,LOC107685718,LOC107602775,LOC106583327 coding downstream 191490 23948531 ~ 23956337 (-)
LOC103045744 NA coding upstream 490340 24774039 ~ 24800901 (-)
lrrn2 lrrn2,LOC108425772,LOC107603068,LOC107739267,LOC107727852,LOC107675837,LOC107656005 coding upstream 951415 25235114 ~ 25354477 (-)
LOC103039085 NA coding upstream 1224789 25508488 ~ 25554687 (-)
LOC103038137 NA coding upstream 1243943 25527642 ~ 25537003 (-)
ppfia4 ppfia4 coding upstream 1304027 25587726 ~ 25770719 (-)
G192579 NA non-coding downstream 64519 24082804 ~ 24083308 (-)
G192578 NA non-coding downstream 92242 24055294 ~ 24055585 (-)
G192574 NA non-coding downstream 98093 23992196 ~ 24049734 (-)
G192484 NA non-coding downstream 263289 23876635 ~ 23884538 (-)
G192439 dvl1,LOC108411373,LOC107685713,LOC107560111,LOC107749512,LOC107655081,LOC107727776 non-coding downstream 540796 23602319 ~ 23607031 (-)
G192597 NA non-coding upstream 16507 24300206 ~ 24352058 (-)
G192754 NA non-coding upstream 560856 24844555 ~ 24860400 (-)
G192757 NA non-coding upstream 621441 24905140 ~ 24905345 (-)
G192758 NA non-coding upstream 626110 24909809 ~ 24910029 (-)
G192763 NA non-coding upstream 678810 24962509 ~ 24963790 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other downstream 41929 24039246 ~ 24105898 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 1089022 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 1344185 22786163 ~ 22803642 (-)
amhr2 NA other downstream 1424922 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 1785369 22349347 ~ 22362458 (-)
G192815 mdm4 other upstream 927976 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 1591211 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 2427554 26711253 ~ 26724106 (-)
G193097 NA other upstream 2747964 27031663 ~ 27033089 (-)
LOC111195340 NA other upstream 3107095 27390794 ~ 27391571 (-)

Expression


Co-expression Network