LOC103045744


Basic Information

Item Value
gene id LOC103045744
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 24774039 ~ 24800901 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682690.1
GTAAAAGACCTaaaaggagaggaggagggatTCTGGGCTTGAGGCTCAGCTCAGCTTTCTTCAGAGGACCAGAGAGCACAAGCACTTTCACACATCCCACGCCACCAAAGGAGGAAGGTACACTTTGAGTGTTGAGTGGCCATCAGAACCAGCGCGAGAACCTGAAAGAACCTGAAGAAACTCACGGACAGTTGTGGCTGCTGGTGACTGATGACTAAAAACATCCGAAGAGTGACCTGACCCATCTGTAGGTGTGAAACGGCGAAAGGAACTACGCCTCAATGAATCTCGATGTGGACGCTTTTCCAAATGTGGACTCCTCTCCATGCCCTTAGGTCAGCCAGATGAACACAAACACTCCAGCCCACAAAGCCAAGATAAGGCATCTGTGTTGTTTCCTTGTCTTGTGCTTGCATTTGGCCTGTGGAGCTGTGCCAGGTCCATGTAAGCACTCTGTCACCAAGGAGCATCTTCTCTATTTAAGACGACTGATTGGGAACCAACTTCAGAATGGCTGCTCTATATCCTACAACTTCACAGAACGGCAGAGCTTGAGTGAAGTCTGCTACATTAAAGCAGCGCTGCCTCATCTCCTGGAACTTCTGAATGCACACTTCAGATATGGACGGGATTCGGATAACTACAACTATGCTAAGTCACTGAAGACCCTAATCTACAACATCTACTCCCAGAAATGCGTTCTTCCAATCAATGAGGAGATTGAGGACAGTCCGGTGAAGTTCGCGAAGCTCCACATGACGTCTCCAAGGGTTGGACTGGAGAAGGCGGAGGAGGTCCTTCAGATGTACAAAAATCTGGTGACCACGACTGACCAACCCATAAAATGGAACTGTGAGGATGAGTACGCTGAGGACCACCCAGATTCCACCACTGCACAAACATCAGGTACCCAAGAATGCCAATGCCCTTGCACAAAAATCAGCTCTACGCTGTTGAGGACATCTGTGCAGATCAGATCAACTTCATCAGCACCCAGATCATCCCCTGCACCCGTCCTGAGACACAAAAATGAAGGACACAGTGAAACTGAACATGTTTTCAAACAAGGAacatttaactcaattaaaatccAACCTTCTCCAGTTTCGCTCTCCAGTGAAACCTCACCCGGGCGGCACACCAGAACTGAACTCTATGGTTCAACCCCTGGGGATTTTACACACATCATCATGTCCAGCACCCCACATTTACTGGACACCCCAATAGAGACGGCGAGGTCACCATCTCAAGCCATGTCTTCTACCACAAGAAAACCGCAACGACGAACTGCCCTCACTGTCCAGTCAGCACCATCTCGACCCGTTCAGAGGAACGTTCCACAGCGCAGAAGGTCAGGCAGAGGAGCACGGAATGTTCTCTCTAAGAGATCCTTAGATACCAAAGTTGGAGGAGGACTATTTGATATGTCCTCTGATCTGATCCAGAGTTGGATTACAACAACTACAACAAACAACCCTGTCCAAACACTTCATGTGGACAGAAAAACAGCACCAAAATCAGCAACACCTCCTCTATCCCTCAACATCACTGAGGATATATCAGATAATGTAATCCCTCCTGCTGAACAGACTGAGGATCTCCAGACTCATCTTCACATGGCAGCATCTCCACCAGAGCATGGAATTAAAACCATCAGTGAGGAATCAGACTGCAAAGattttgaatgccaaaaggacactgagGCCACAAACGATCAGATTTCCAAACATCCTGAAGCAGAATACTGGGTGAAGAACATCCAGCTTTCCAGCAGCTCCATAAAAACAACAGTCCTTATTATATCTGTGTGCTTTATACTACTGCTTCTCTCCACCCTCACCTTCTCCAAGCAGCGAACGAACATCTCAACACCTGCTTTAAAGACAAACAAGAAGAACAGCGACACTGAGGTCAAACATCTCTCGAGGATACAGCTTTAGAAGTGCACAGCTCATGAACAACATGGATGGATGCTGACATTGGGATCctcattgaaaaaataaaaatcaaccacATACGggaccagtcaaacgtttgaaCCACctttcattcagtgtttctcCTTTTAATTTCTTCTACACCTGTAGATTTAATATTGGAGAGATTAAAACTATGAAAGAACATATGAAATGGTGTAGTAAACAAAACCATGTAAATTAAACTAGAATAAGTTTtataatttagagtatttaaaaGTAGCTCTGTTAGCTTTAATGCCAGCTTTGCCTACACTTAACATTCTCTCATTTAAAAGTGTGAACCAGAGTCCAAACCAAGGCTTATGCATTTGTAATATTGTACATGATACATTCAatccagttagttttggtttcagactgcagtttagtgagtgggttaaagaactttactacatcctgtcggCATCACTCACGTGTGAATTCTCCCTAGACCGAATACtcgacactgattggtttgtacaATGTTGTTGACAAGTTGTTGACAGCACAAGTTTGAAATCTTGCCCTCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682690.1 True 2490 mRNA 0.45 10 24774039 24800901

Neighbor

gene id symbol gene type direction distance location
nfasc nfasc coding downstream 490340 24147827 ~ 24283699 (-)
LOC103040944 LOC108425718 coding downstream 746994 24015546 ~ 24027045 (-)
LOC103040645 chia.2,chia.3,LOC108425699,LOC107555079,LOC107685745,LOC107727181,LOC107655977,LOC107727762 coding downstream 772091 23994623 ~ 24001948 (-)
LOC103040327 LOC108425717 coding downstream 785840 23980543 ~ 23988199 (-)
zc3h11a NA coding downstream 803872 23957828 ~ 23970167 (-)
lrrn2 lrrn2,LOC108425772,LOC107603068,LOC107739267,LOC107727852,LOC107675837,LOC107656005 coding upstream 434213 25235114 ~ 25354477 (-)
LOC103039085 NA coding upstream 707587 25508488 ~ 25554687 (-)
LOC103038137 NA coding upstream 726741 25527642 ~ 25537003 (-)
ppfia4 ppfia4 coding upstream 786825 25587726 ~ 25770719 (-)
LOC103036054 mdfi,LOC103036054,LOC107548515,LOC107675846,LOC107728619 coding upstream 1207895 26008796 ~ 26085478 (-)
G192597 NA non-coding downstream 421981 24300206 ~ 24352058 (-)
G192591 NA non-coding downstream 493348 24280374 ~ 24280691 (-)
G192589 NA non-coding downstream 511484 24260634 ~ 24262555 (-)
G192579 NA non-coding downstream 690731 24082804 ~ 24083308 (-)
G192578 NA non-coding downstream 718454 24055294 ~ 24055585 (-)
G192754 NA non-coding upstream 43654 24844555 ~ 24860400 (-)
G192757 NA non-coding upstream 104239 24905140 ~ 24905345 (-)
G192758 NA non-coding upstream 108908 24909809 ~ 24910029 (-)
G192763 NA non-coding upstream 161608 24962509 ~ 24963790 (-)
G192806 NA non-coding upstream 389192 25190093 ~ 25192060 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other downstream 668141 24039246 ~ 24105898 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 1715234 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 1970397 22786163 ~ 22803642 (-)
amhr2 NA other downstream 2051134 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 2411581 22349347 ~ 22362458 (-)
G192815 mdm4 other upstream 410774 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 1074009 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 1910352 26711253 ~ 26724106 (-)
G193097 NA other upstream 2230762 27031663 ~ 27033089 (-)
LOC111195340 NA other upstream 2589893 27390794 ~ 27391571 (-)

Expression


Co-expression Network