LOC103038137


Basic Information

Item Value
gene id LOC103038137
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 25527642 ~ 25537003 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682700.1
taccctATTTAATGTATGTAGTGCAAAAACAAATTGGTATGCaactttttattgattattaattaattgacaGCTTCGGGTAACCAGCCTGTTATTTTTTGATCAATCTTTGTAAAACTGGACTGCTATTCAACACCTGaatctgaatattatataataatatataatatatactctGCATAAACCCCTTTAAACGTACCAGTACAGCTGAAGTATGTTTTACTGACATCTTGAGCATAGCAGGAGTGTTTCTGCTGCATATTTTGTTCTTAAAGTGAGATTGTTACCGTTTTTGTGAGGAAAAATGTTGCTTCAGGAGACATCGCAATCTGTTAACATACGTGCTTAGATAACATACTAGACTATAGTAAATGATACCTGTAAAATATGGCGGTAGCGTACCAAGATTTTTGTGTGAAAACACTATTGAACAGAGGGATACCAGTCAGCTCGTTGGACACTGAATGCTGAAAGCAAAGACGaTGCTTCGCAGAAACAGACGTAGAGTAGAGCCCAGCATGGATGGAATTTCTACAGAGAAAAGCTTCATGGTGGAGTCCCTCTTGAAATCGTGCAATTTCAGACAAAAACTGAGGTACAACGTAAGTGTGGAAGAACTCAAGCGCCGGGTTGGACCACCTGAGTTCATGTCAATAAATGGGCTTGTGTCGCATCTTCGGACGTCTCAAAGCAATAAAGTCTCCCTGAGGAAAGTGTTAACAGATGTGGGGGTAGTTCCGTCCCAGTCTACTCGCCTTACATCCCTGTGTTCCAAACTAACAGAagATGAGGCCGCAGACCTGGCAACGGACCTAGAAAAGCTTGCGTgcaattttattgattttaaaatggctGCTGAGGCTCGGAGGTCATCCGGAGACAAGACGACAGAATTGTCGAGAACAAAAGCTTTTCGAGAATTCTTGGCCCAAACTAAAAAAGCACTGATTCCATTCATGAGCTGGTATGATACAGTAACTCATGGTCTGGGTCCAAAGGCTTTTGGCATCACTGTACAGATCATGGACACATACTTGAACCAAGTAATACAGCAGCTCTCAGAGGATCTGGGAAGCTAATATAAATGGACAGACCATCTGCACACAGTTTGATGGACGTACCAGactgatctttaaaaaaaaaaaacacATTATGGTAGGAAAACGTAAAATTAAGAAGACTAATTCTGCCGCTCACCCAGCCAAAAAAAGGAGTAAAGG
>XM_022682701.1
GCTCTCAGAGGATCTGGGAAGCTAATATAAATGGACAGACCATCTGCACACAGTTTGATGGACGTACCAGactgatctttaaaaaaaaaaaacacATTATGGTAGGAAAACGTAAAATTAAGAAGACTAATTCTGCCGCTCACCCAGCCAAAAAAAGGAGTAAAGGCCAGCTGACTGTCAAACCATTTCAGTGGAACAGAAGAATGAGcccagaagaagaggaagataaaGAAGCGGAACAGAGCAAGGGAGCGTATAAAGTATTGGGACGTTTGACGGTCCAAAAGAAACACTACTGGGTTAAACGTGATGAAGTGGAGAGGCGAGTCAAAGGAGAGAATATGTCAACCAACGTCTTCCGGTCTTTATTGAGGGTTGCAAGAAAAGACCTTCCCAAAGACGTCCTAAACCAGCCCAAAAGTGCCAAAACTAGGGTCTCAGTCTTCAGCGCTCTAACCGAAGGAGAGGCCCAGGACCTGGCTGAAGGTTTTGGAGCGGCGCTAATGAGGCACGTACCCAGGTATCACCTTCTGGATGGAATTCACGAGGTGGATATAGCCGCTTCACAccgTACGATTCAAAGGATAAGGACAAATTTCCAAAGTCTTGGCCTGGAGTCCGATTTTGACTTGACAACACATCGTTTTGGCCCGACAGCTGTGGAAATCTTTTTGTCCTTCTTAGAGGAAACCCTGCAGTCAACACTGGGCTTCAtgccttatatataaatattagtgTGAAACAGACAGTGGTAAAATCAGTCCTAGCTCAAATATTTCTGCATCAAAATGAGCTCTACACATGGTGGCAGTACCATCATCGTTTCTCCAGATGTGCCCACCTCTGGATTGTTGTAGATGCGGGATTGGATGCAAATGGGTTGCTTCTGTTTAAAGAGGATATTGCTTGTAAAGATCTTATTTATATTGTGTCAAAACATAAGTTATTCTTTTATATTCTAAACTACAATATTATCCAAAGATGAAACTTCCAAAAAAAGGTGTAAGAGCATGGGTAATGCCTAAGCACTAAGTACTGTGAATGTTGAATCATAcaatgtgtacacacacacttaactatACGTTTGAGTACGATTTTCAGTAAAGCTGTCTTTATTATACACTCCGGATAAATAGTTGCACTCAAAGGGAAGTGACTGATTCAGAAAGAAGATTAAATTCATCAGgagcaataaatgattaaaactaCCCACAAAGTTTCAAATTCTGTCAATTGGTTACTggctattttttttcacaatgtaTACGGTATTTGTTAATGTCTGTTTTCAAGCTAGCTAAAAATACCCCATCATTCCAGATGTTTAATGAgacacttatttattttttttatttaatattttttaaataaacatgttggTCAAAAATATGGGCAGCCTCTGCatcatttttcttatttctcctattttttaataaatttaatcaGCCTGGGGTTAAATTTGTGTGGCATGATATAATACCTTTATTGGAAGGTAGGAGTGGGAATCACAGTGCATCTCTCAATGTAATATTATGATTCATTGCCCGTAGTCAATGATAATCATGCTACTGTGATACTctacacaataaacataaaagttGTGGAATTATGATACCATAGGAAACTTCTTATTTTTCATTACATATCTACCAGTTATTATGGTTTACTTTGGTCCAATATTGGAATACAGTGGACTATTTTCatcatgacatgttggatcGCTGAATTCTGGAAAAATTTAGTGAAAATCCCTTTAACTTTTAATATCGCAATTAATATTGGGGACGATGAGGAAATGTTGGTCTGAGATAAATGGTCACATATCTAAATATGCAGGATACGCACCTGCTCTCAGCAGTCTACAGTTCTGCTTTGCATTTTCAGTTTCTTATCAGTCAAGTCCAAATTTCCACCTCATTAATTCATATCACTGATCAGATTGAAAGTGGTTCATTATATCATTTGCATGCATCTTTGTACGTCTGTCATCATCACCACGCCCTAATACTACTATTATGGCTACATTTAAGAAGATTTTACGTTTTATCTTTTTGTATATTG

Function

GO: NA

KEGG:

id description
ko03410 Base excision repair

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682700.1 False 1220 mRNA 0.40 7 25530909 25537003
XM_022682701.1 True 2061 mRNA 0.38 5 25527642 25532853

Neighbor

gene id symbol gene type direction distance location
lrrn2 lrrn2,LOC108425772,LOC107603068,LOC107739267,LOC107727852,LOC107675837,LOC107656005 coding downstream 173165 25235114 ~ 25354477 (-)
LOC103045744 NA coding downstream 726741 24774039 ~ 24800901 (-)
nfasc nfasc coding downstream 1243943 24147827 ~ 24283699 (-)
LOC103040944 LOC108425718 coding downstream 1500597 24015546 ~ 24027045 (-)
LOC103040645 chia.2,chia.3,LOC108425699,LOC107555079,LOC107685745,LOC107727181,LOC107655977,LOC107727762 coding downstream 1525694 23994623 ~ 24001948 (-)
ppfia4 ppfia4 coding upstream 50723 25587726 ~ 25770719 (-)
LOC103036054 mdfi,LOC103036054,LOC107548515,LOC107675846,LOC107728619 coding upstream 471793 26008796 ~ 26085478 (-)
LOC103035733 foxp4,LOC107739274,LOC107728618 coding upstream 577434 26114437 ~ 26349705 (-)
il10 NA coding upstream 1592149 27129152 ~ 27133856 (-)
LOC103047370 NA coding upstream 1610711 27147714 ~ 27153326 (-)
G192887 NA non-coding downstream 24112 25502503 ~ 25503530 (-)
G192871 NA non-coding downstream 69014 25458413 ~ 25458628 (-)
G192869 NA non-coding downstream 75988 25451268 ~ 25451654 (-)
G192822 NA non-coding downstream 164906 25362531 ~ 25362736 (-)
G192821 NA non-coding downstream 263648 25263039 ~ 25263994 (-)
LOC111195414 NA non-coding upstream 3019 25540022 ~ 25542358 (-)
G192892 NA non-coding upstream 41860 25578863 ~ 25580309 (-)
G192944 tmem183a,LOC107656009,LOC107727871,LOC107739272 non-coding upstream 238394 25775397 ~ 25779194 (-)
G192947 NA non-coding upstream 245379 25782382 ~ 25785455 (-)
G192951 NA non-coding upstream 272065 25809068 ~ 25818951 (-)
G192815 mdm4 other downstream 310092 25211675 ~ 25217550 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other downstream 1421744 24039246 ~ 24105898 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 2468837 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 2724000 22786163 ~ 22803642 (-)
amhr2 NA other downstream 2804737 22709549 ~ 22722905 (-)
LOC111195415 tfeb other upstream 337907 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 1174250 26711253 ~ 26724106 (-)
G193097 NA other upstream 1494660 27031663 ~ 27033089 (-)
LOC111195340 NA other upstream 1853791 27390794 ~ 27391571 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other upstream 1888039 27425042 ~ 27701331 (-)

Expression


Co-expression Network