LOC111195421 (ddx19,LOC108411521,LOC108255077,LOC107680447,LOC107699345,LOC107572851,LOC107556002,LOC105931731)


Basic Information

Item Value
gene id LOC111195421
gene name ddx19,LOC108411521,LOC108255077,LOC107680447,LOC107699345,LOC107572851,LOC107556002,LOC105931731
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 28190720 ~ 28201222 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682747.1
CCGGTGTGCTCAGACTTGCTTTAGTCCGGAGGAGTGAGGGCAGCACACTGTGTGAGAAGTCCGGCTTCCACACGGCGCAGGATTCATTAATTTTATTCTATCAGTTTATAAAAGGACTGCGTCTGTTTACCTGCCTGCCCGAGTTCAACACTGAGTCTCGACACTCACATAAACCGGTCTAATTAAATAGAAGCGGTTTCCTGAAGTTGTTGGAGAGAAATGGCGACAGACTCGTGGGCGCTGGCGGTGGATGAGCAAGAAGCGGCGGCGGAGTCGATAAGCAACCTTCAGTTAAATGAGAAAGAAGACAAACCAAAGGAAAAACCAGAGGAAAATGgaGCTAAGGCAGCAGCTGGAGAGAAGACTGAGAAAACTGAGAAGACGGAGAAAACCGAGGAAGACGATAGTGAGGACAAAGCAGCCCAGTCACTGCTAAACAAGTTAATCAGAAGTAATCTAGTGAACACAACCAATCAAGTGGAAGTTCTTCAGAGAGATCCGAACTCGCCGCTGTACTCAGTCAAGTCATTTGAGGAGCTGAGATTGAAACCTCCACTTCTTCAAGGTGTTTATGCAATGGGCTTCAACAGACCATCCAAAATTCAGGAGAATGCTCTCCCTATGATGCTTGCAGAACcCCCACAGAACCTCATTGCTCAGTCTCAGTCAGGAACGGGTAAAACTGCAGCCTTTGTCCTGGCGATGCTCAGTCACGTGGATCCCAACAACAAATGGCCTCAGtgtctgtgtgtctctcctaCATACGAGCTTGCCCTCCAGACTGGCAAGGTCATCGAGCAGATGGGCAAATTTTACCCTGAAGTCAAATTAGTTTATGCAATCAGAGGAAACAAatTGGAAAGGGGGATGAAGCTTCAGGAGCAGATTGTGATTGGCACCCCTGGAACAGTCCTGGACTGGTGCCAGAAGCTCAGGTTTATCGACCCCAAGAAAAtcaatgtgtttgtgttggatGAGGCTGACGTGATGATTGCCACACAGGGTCACCAAGACCAAAGCATCCGCATCCAGAGGATGTTGCCCAAAACTTGCCAGATGCTCCTGTTTTCAGCCACATTTGAGGAATCTGTATGGAACTTTGCGAAGCGCATCGTCCCTGACCCCAACATCATCAAGCTGAAACGTGAAGAGGAGACACTGGACACCATCAAGCAGTACTATGTAGTCTGTAACAGCAAGGAGGAGAAGTTCCAGGCTCTCTGTAACATCTATGGGGCCATTACCATCGCACAGGCCATGATCTTCTGCCATACGAGAAGAACAGCAGGATGGCTTGCAGGGGAGCTGTCTAAGGAGGGCCATCAGGTGGCGCTGCTCAGTGGAGAGATGCAGGTGGAGCAGAGAGCTGCTGTAATTGAGCGTTTCCGAGGTGGCAAAGAGAAGGTGCTGGTTACCACAAACGTCTGTGCCAGAGGTATTGACGTGGAACAAGTTTCTGTGGTCATCAATTTCGATTTGCCGGTGGACAAAGACGGAAACCCAGACAACGAGACATATCTGCACCGGATTGGCCGCACAGGGCGATTCGGAAAGAGGGGGCTAGCTATCAACATGGTGGACAGCAAGTTCAGCATGAACGTACTTCACCGCATTCAGGAGCACTTCaATAAGAAGATTGAGAAGCTGAACACAGACGATTTGGATGAAATCGAGAAAATCGCCAACTGAGGAGAATGATTCCGCCGCTAgtgcaggagcagcagcagcgatAGCAGCACTGTGCATTCCCGCAGTGGTTTTAACTTGTAGGCTGGAGCGGAACTAAGCCACGGAGGACGTTTTTATAAGGAACGTGGCCATGTCTTATCAGAGGGTGTCTTTATAGGTTTTAGCATTTTAACCCTTTGTTTCACTCTTTGTACTTCTAAATAAAATCTGAATGTGTAGTGTTTGTTGCGCGTGAGTGAATGCTACGTGTAGATTGCTGGTAGCAGATCTTATGCCTTTATGCTTGCTCATGTAGAGGACATGCTGTTGCACCATCTGAAATTTAATAGAGAAAAGTCACTATTCACACTGATCAGGGATGGACCTGTGAGAAATTGATAGAATGCTTTGAAGGCTtggtgtggtgttttttttttttttttatataaagtttgCAGTGCTCACTGTAGTGATAATGCTTCTATATCTATATAGACACAAGTGCATTGTTCTATTTTGACTGTttactgatttatatatatatataattttgatcACTTTGAGTTTATGCAACTACATTTTTGAACCTCTCCAAACTAAGGGGTTTAGGTACTGATTATCTTCAGTTTTTTGAGGACACTACTGTTATAGTTAAAGcttaaaattgataaaatctTTATTGCGAGTATATTGCTAATTTTATACCTCAAAGATCAGTGAGTTTGTTTACATGCCTTCAAATCCATTCATAATCTGATTTGTTATTCTGCAGTTATCTGGTTATTTAAGTACCCACTTGAACCATATAGTCAGATTTCATAGATTAAGGTAAGAGTTAGAAAGCCAATAAGGAAATCTGGTAAAGAGAACTGGGTTAACTGGAACTCGTAATTATATTATTCCTAGATTTTTCAGTCTGAGCGTTCAGTGAAAACAGATCCGgtactagaaataaacaagcagCCTGTGTTTTAACACAACACCTGCCAAACagtgaaaaacaaacacatttggACTTAAATAATCTTCATCTTCTAGCTGATGTATGATATCATATTACAGCTCAATGTGTCTCTTTTTAAGCGGCAACATGAAGTGTGGCATAAGgttttatgtaatatttgtcATGGCTTTCCTGTGAGTTTATTTGCTGATTTCAAAGAAAAATCTGATTGGTGCCTGACTCATGTAAACTCTTAAGTTTTCCCATTATGTGATTTCTTACCCAAGTTCTTGTAAACACATTGATCAGATTACTGAGTAACTCTAATGATCTGCAGTAATTAGATTATGAAATGTATGCAAATTCAGTCACTGTTAAACCCTAACAAATGGAGCTGCCAAagctaaaaatgtataaaatgcttTTGAGGAGCCAAAGACTTGTGCCCGTATGTGTGTAGCAGTACACCCAACTCAATCTGAAGTGAAATCAATCATGCATTAAACCCAGTTTGGATTTGAATTGAGAAGTACAAAGAGTGAAAGGGGTGCGAAATGGCAGGTGCTTTTAATGGTGCTGATGGTGTTACACAGCAGCGGTGTAGAGAAACAGTACATGTTCTGCACAGAGGACTATAAAACACCTGTCCTGTGACAGCTGTCATGTTAACATAAAATGGAGACTTAAATAGAAAATGTGCTTATGGCTTGTAAATGCATCCTTATACTTCAGGGTGTTATATTTTGAGACTTATCACTTAAATTAAGATTTAAGACGGATTCAATATGGAAATCTGAGACCTTTATACTTTTGTGATTTGTTACAGCAGTTTTTTGTAATGcttattagcttttttttatttgggatattatttgcaaaaattctgaagaaaaatgtaaaaaaaaaaaaaaaaagctaccaGCTACTGGATCAACTGTTAGGCCCTGTCCACATGTACCtagcataaataataataa

Function

symbol description
ddx19 Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be active in cytoplasmic stress granule and nucleus. Orthologous to human DDX19A (DEAD-box helicase 19A) and DDX19B (DEAD-box helicase 19B).

NR:

description
PREDICTED: ATP-dependent RNA helicase DDX19B

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K18655 DDX19, DBP5; ATP-dependent RNA helicase DDX19/DBP5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682747.1 True 3588 mRNA 0.42 12 28190720 28201222

Neighbor

gene id symbol gene type direction distance location
LOC103044609 acap3b,LOC108254862,LOC107680440,LOC107714502 coding downstream 28358 28065882 ~ 28162362 (-)
LOC103026702 hipk1,si:ch211-160o17.4,LOC108254861,LOC107680439 coding downstream 142025 28030686 ~ 28048695 (-)
b3galt6 b3galt6,LOC107592565,LOC107680432,LOC107699339,LOC107555998 coding downstream 162050 28024337 ~ 28028670 (-)
LOC103028137 LOC103028137,LOC108436315,LOC104939458,LOC108254806,LOC103386138 coding downstream 182111 27962367 ~ 28008609 (-)
LOC103045240 LOC108436365,LOC107592563,LOC107699336,LOC107680449,LOC107751004,LOC108254807 coding downstream 235668 27911675 ~ 27955052 (-)
LOC103026411 LOC107680412,LOC107751023,LOC107555990,LOC107714481,LOC107699319 coding upstream 16239 28217461 ~ 28224664 (-)
LOC103044024 LOC108436218 coding upstream 52562 28253784 ~ 28267940 (-)
LOC103025279 tmcc1b,LOC108436190,LOC107746889,LOC107755185,LOC107696833,LOC107656050 coding upstream 68735 28269957 ~ 28294968 (-)
LOC111195423 NA coding upstream 95083 28296305 ~ 28301008 (-)
LOC111195424 NA coding upstream 101346 28302568 ~ 28308048 (-)
G193411 NA non-coding downstream 24639 28165841 ~ 28166081 (-)
G193386 NA non-coding downstream 123039 28067474 ~ 28067681 (-)
G193370 NA non-coding downstream 454609 27735902 ~ 27736111 (-)
G193369 NA non-coding downstream 459058 27731003 ~ 27731662 (-)
G193367 NA non-coding downstream 466615 27723860 ~ 27724105 (-)
G193424 NA non-coding upstream 33943 28235165 ~ 28236469 (-)
G193426 NA non-coding upstream 42586 28243808 ~ 28244702 (-)
G193435 qrich1,LOC107729405,LOC107558890 non-coding upstream 116122 28317344 ~ 28318704 (-)
G193477 NA non-coding upstream 194475 28395697 ~ 28469608 (-)
G193540 NA non-coding upstream 394429 28595651 ~ 28596007 (-)
tmem167b tmem167b other downstream 175108 28010991 ~ 28015612 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other downstream 489389 27425042 ~ 27701331 (-)
LOC111195340 NA other downstream 799149 27390794 ~ 27391571 (-)
G193097 NA other downstream 1157631 27031663 ~ 27033089 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other downstream 1466614 26711253 ~ 26724106 (-)
LOC111195343 LOC108434908 other upstream 374885 28576107 ~ 28586222 (-)
G193541 NA other upstream 396333 28597555 ~ 28598638 (-)
G193737 NA other upstream 1964539 30165761 ~ 30180126 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other upstream 2608572 30809794 ~ 30830957 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other upstream 2969076 31170298 ~ 31194049 (-)

Expression


Co-expression Network