LOC103044024 (LOC108436218)


Basic Information

Item Value
gene id LOC103044024
gene name LOC108436218
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 28253784 ~ 28267940 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682752.1
AATTCTCCTCTGTATCAGAGATTCTTGATTCTCTGGAAACAGCAGGAAAACTAGCGGCTGGATTCGGCACCCCAGTGGGACTCCCCGAGAAGCGGCGCTGCTGGAAACGGGCTGTTTATGATTATGCGAAGAGCTCGATTTAAGGCTGCCTGCCGAAGTTTAAGAAGATGGGAGCCCTCCCTGATCCATTCCTGAGACGGTTGTTCTGGCTGGCTGCTCTCTTGGCGCTGTTGGATTATGCAGCTGCGGCTTCTGAATTTAATCCTTACAGGGTGCTTGGAGTGTCAACACATGCCAGTCAAGCCGAGGTCAAGAAGGCCTACAAGCAGCTTGCCAGGGAATGGCATCCAGACAAGAATAAAGATCCAGGGGCGGAGGATATGTTTATCAAGATTACCAAGTCCTATGAGATCCTGTCAAACGAGGAGAAGAGAGCAAACTACGACCGGTTTGGTCAGACAGATGAGAACCAGCACCATGGCCAGGCACCGCAGGGCTTCCGACACTTCCACGACAACTTTTACTTCGACCAGTCATTCTTTCACTTCACACGCTCGACCCGAGATTTCACAGACAGCAAGCACCTTCTGCACCACGATCATTACATGAAAGAGGTGGTGCCAGACAGCTTCAAAAGACCCTACCTGATAAAGATGACCTCTGAGTGGTGCTTCACCTGCATCCATATAGAACCGATCTGGAAGGAAACAGTTCAGGAGCTGGAGGCATTGGGTGTGGGAATTGGTGTGGTGGACATTGGGTACGAGAAACGGCTTGCCAGCCATCTTGGTGCCCATCGCACCCCCTCTATTCTGGGGCTCATTAATGGGAAAGTGACTTACTTCAATTATGCTATATCCAAGGAGTACTTAAGACAATTTGTGGAAAGCCTTCTGCCACAGAGGCTAGTGGAGAAGGTGACAGATGATACTTacttgcagtttttaaatggttGGCGTGAGGAAAACAAACCTAGAGTGCTACTGTTTGACGCGGTACCTTCAGTGCCTTTACTGTATAAGCTCTCAGCGTTTGCGCATCAGGATTTTGTGAGGTTTGGGTATGTAGATCAGGGCCTGACTGAGACTTTACGCATCCTGCAGCAGTTCAACATCAACACATATGCTCCCACCATGCTGCTGTTTaaggagaacacagagaaacCTGCTGATGTCATACAGTCCAGGGGAATGAAAAAGCAGCTCATTGATGAGTTTGTCTCCAACAACCGTTTTTTGATGGTACCACGACTGGTCAACCAGAAGCTTTTTGATGAGCTGTGTCCAGTCAAACAGTTCCACCGCCGTCGAAAGTACTGTGTGTTGCTCATCACGGGGGAGGATGAGGCTTTCGTCCCGGTGAACGATGCTTTCTTCGCCTTCGCTTCCGCCAACACTAAAGAGGTGCTGAGATTCACCTACGTCTatcagtggcagcagcagccgCTGTGTGATGCTCTTCTGAAAAAGGAGGACATGACCCCTCCTCAGGTAATTATTCTGGAGAGGCGGAGCACCACAGGTAAAGTGTTGTATCGCACAGTAAAGGGCGGCTGGAATGGAAGTGATGAAGATAAGCACCGCCTCCACGAGCAGCTGGAGCTCCTGCAGAGAGATCCTTCGTTCCTCACCTATGACGCCATGCTGCCGGAACTCAACAATGAGTTCGCTTCTATGTTTATAATTCAGTGGGCGAACGCTGCTTATGATTACCTCTCTGAAATGTACTTTGATTTTCTCCACTCAAACTGGCGAGAGATGATGCCAATCGTGTCTCTGATCTTCTCTGCTCTCTTCATTCTGTTCGGCACTGTCATCATTCAGGCTTTCAGTGACTCTGGTGAAGAAAAGCCAGCCAAGCAGAAGGCGAATGAATCACCAAAGACAGCGGAGAGCTCTCCAAATGCTGAAAACACGAGCAGCCGTCCTCCTAAGAAGAACTTTGTGGAGGTGACTGAGCTGACTGATGTGACGTACACCAGCAACTTGGTGAGGTTAAGGCCGGGACACATCAACGTGGTGCTGGTGCTCACTGACACATCCAAACAAGCTCTGCTGAAGAAGTTCGCCAAAGAAGTGTACTCTTTCtcaggGTCCCAGACTCTTCACTACTCCTTCTTAAACGTTGATAAACACAGCCAGTGGATGGACAGTCTCCTGGAGTTAGCGCCCAGCTCCAGGCCTCGGGAcgaggaggaagaagagagcACGCCTTCCAGTAAACGGGACTACACCGGCTACGTGCTGGCACTGAACGGGCATAAGAAATACTTCTGCCTCTTCAGGCCTGTGTTCACCGGGGATGAGCCCGACTGCAGCAGGTCGTCCGACGAGGACGGCGGGGGATCTCGAGCGAGGTCCAGAGGCAGCTCTCGACAACGGTCAGCATCCACCCGGCAGATCCATCACAAACTGGACCATCTCAGTCTGTGGATGGAGAGGCTGATGGAGGGTACCTTGCCTAGGCACTATGTTTCAGACTGGCCTGATCTGAAAACCATCAGCCCTCAAAAATAGCTGGAAAAAGCTGGACGGAAGCGGGACGCGTCAGAATGCTTGCACGTGCATGCCCTGTCCACTCCTGCTCACGAAGCTCCACAGAGAATCACTGGATTCCTCTGCATGGGGCATCTGATGATGTGGGGAACAGCAGCAGGGGTTGATTTCCgtttgtgtgtgaagtgtgaggCTTTGTTAGGAAACTGACTTTTACGGAAagcgtttttattattattattattgttctgGATTATGCACTGTCTGGATCACTAGGGAGTTTTGAATAGGAGTACCGTGTGTGCTTTCATTTTTCTTGTGCTGCTAGCTGGGGCTACACTTGCTGACCATGTCATAATCatgataaaaatacaaaaaactaatGTACAAAAAACGTTTACCGCTGCTTTATGCTGTAGGAGCTTTTCTCTTAGGGTGTGCTCACACTAGGCTTTCTGAACCGTGTCTGAGCATGCTTCCCCCCCCAGTCCTGTTGCAATAAATACAGTGTTGACTTATGGAACAATAAATGGACACAACTATTGTTTTAGCAACAAATACTAGCCAAAATAAGCCATGACTTCAAAAAAATTGCACCTCCTGTGTTAATTTGCTTTTTTCACTTATATAAGACTGAATACTGAAggtttttttatgaaatttgCCTACATGTACCATAGTTTTGTCTTGATCTAAAAACGAAAAATAATAGTTGTTtggaataaattatttaatctttttacATATTTGGCTGAACAACAAATCatttcagttgccaaatattaaatatgtccCTAATTATTAAGAAACCAGAACCAAGAACAGagatattaaaggagaactccggtgtaaaattgtaaaacctAATAAAAAGAGTACTAacatttgttgaatagccctaGTTTCTGAAATCCTGTGAATTTTTACAGTTcgtccaaacatgctttagaatggatgatatggagCATATTTTTCCTctgcagataaattgctttttacaccattatccaggctcaaagtagctccacacctggtagaatccggagagtcctgacatttaaaacgagacatTATTAACTTTTGAAAGTGCACAACTCACAAatttgtcaacattttttgCAATTAAAATTGTGGTAATTGTAGCAGCAGTAGTGCTCAGGTACGATACAAATCAATCAAGCCTAGTGTGGGGATACCCTTAAAGTCAGTTTATGCCCAATGGTAAAATAGagagttaaaatatattaaaggcaTTATATAGAATTTGtctatactaaaatatatataaaaaatctagAAGTGGGTCACTAGTGTCCATGCGGGATTCTGTAAACTCCTAAACAAGCAAGTTTAGAAACACTAAttggaatttctttttttatttatcttttctgaaccctaaaaaaaaaaaacaataaataatttgtatttattcacaCCACACTCAAAACTGAATTAAAGGTGCTTtatcatttgtaacatttatataaatatctcATCACTGTTTTAACTGGCTGGTTAATTTCACTAAATAGTTAGGACatcaaaaattatttatttattattattcttttttataaatagtGTGCACACTGTGTTCAAATGTTTATGGTTGGCCATTCTAATATTCTGGTTCTTACAAaggagtgcaaatgtacacacaAACTCAGCTATTCACCAtatctaatgccaggtgtgtgcgagagggatagagagagagattctcaCAGCTGTGCTCCATAATCTAGTAGAAttcctttcctggacagtagagaattgaacacagtactgtatattacacaGTACTAATTTACAGAACAAACAAAATTCTAATACTACGTATTGCACCTTTAATTCTATTGTTATGAGCGTGGTGTTTGTTTACTTGCATGAAACAAAATATCATAGTTGCCAGATTTTGTTTAGAAGATATAAGCAATTAAATTTTTTGCATGTCACGTCTTTCCTTAAACTCCGCCTACTGTAGCATTAATGCTCcttagctttttttgtttttgtttatgggTATTGCACTTTGACtgctttttgttgtttgtgctCAGGAGGCCTTCACTCAGAGATACTTTAGTACGAGTGTGTTCCACTGATTGTTATTTACATGTAGGCCTGGAATGCTTCTAACAATGTATAAAAAAGTCAGGCATAGGGATTTTAACCTTTGGAGATTAAATATATGTCCTCTTTATTTAAGagaagattttttatttataagatgtttcattgttttatcCATGTGACTCACATAACggttaatttaaataaagtttacacAAAAGCTAAA

Function

NR:

description
PREDICTED: dnaJ homolog subfamily C member 16-like isoform X2

GO: NA

KEGG:

id description
K09536 DNAJC16; DnaJ homolog subfamily C member 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682752.1 True 4797 mRNA 0.43 15 28253784 28267940

Neighbor

gene id symbol gene type direction distance location
LOC103026411 LOC107680412,LOC107751023,LOC107555990,LOC107714481,LOC107699319 coding downstream 29120 28217461 ~ 28224664 (-)
LOC111195421 ddx19,LOC108411521,LOC108255077,LOC107680447,LOC107699345,LOC107572851,LOC107556002,LOC105931731 coding downstream 52562 28190720 ~ 28201222 (-)
LOC103044609 acap3b,LOC108254862,LOC107680440,LOC107714502 coding downstream 91422 28065882 ~ 28162362 (-)
LOC103026702 hipk1,si:ch211-160o17.4,LOC108254861,LOC107680439 coding downstream 205089 28030686 ~ 28048695 (-)
b3galt6 b3galt6,LOC107592565,LOC107680432,LOC107699339,LOC107555998 coding downstream 225114 28024337 ~ 28028670 (-)
LOC103025279 tmcc1b,LOC108436190,LOC107746889,LOC107755185,LOC107696833,LOC107656050 coding upstream 2017 28269957 ~ 28294968 (-)
LOC111195423 NA coding upstream 28365 28296305 ~ 28301008 (-)
LOC111195424 NA coding upstream 34628 28302568 ~ 28308048 (-)
LOC103024327 NA coding upstream 55415 28323355 ~ 28329288 (-)
LOC103043100 ncoa3,LOC108436109,LOC108255004,LOC107717960 coding upstream 191140 28459080 ~ 28507556 (-)
G193426 NA non-coding downstream 9082 28243808 ~ 28244702 (-)
G193424 NA non-coding downstream 17315 28235165 ~ 28236469 (-)
G193411 NA non-coding downstream 87703 28165841 ~ 28166081 (-)
G193386 NA non-coding downstream 186103 28067474 ~ 28067681 (-)
G193370 NA non-coding downstream 517673 27735902 ~ 27736111 (-)
G193435 qrich1,LOC107729405,LOC107558890 non-coding upstream 49404 28317344 ~ 28318704 (-)
G193477 NA non-coding upstream 127757 28395697 ~ 28469608 (-)
G193540 NA non-coding upstream 327711 28595651 ~ 28596007 (-)
G193568 NA non-coding upstream 607977 28875917 ~ 28930921 (-)
G193637 NA non-coding upstream 907974 29175914 ~ 29176124 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other downstream 40714 28194379 ~ 28213070 (-)
tmem167b tmem167b other downstream 238172 28010991 ~ 28015612 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other downstream 552453 27425042 ~ 27701331 (-)
LOC111195340 NA other downstream 862213 27390794 ~ 27391571 (-)
G193097 NA other downstream 1220695 27031663 ~ 27033089 (-)
LOC111195343 LOC108434908 other upstream 308167 28576107 ~ 28586222 (-)
G193541 NA other upstream 329615 28597555 ~ 28598638 (-)
G193737 NA other upstream 1897821 30165761 ~ 30180126 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other upstream 2541854 30809794 ~ 30830957 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other upstream 2902358 31170298 ~ 31194049 (-)

Expression


Co-expression Network