LOC103043100 (ncoa3,LOC108436109,LOC108255004,LOC107717960)


Basic Information

Item Value
gene id LOC103043100
gene name ncoa3,LOC108436109,LOC108255004,LOC107717960
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 28459080 ~ 28507556 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682761.1
TGTTTCCCATTTAAACAAACACAGCTAGTGCTGAAGATGGCGGAGCTTTCCGAAGTGGCTTAAAGGAGCTGGCGTGCGGCTGCGGACGCGTTTTCTAGACCGGTGCAGACGTGGCCTTGCTGAACATATAGATGCACTCCTTGACTGGGTTTTCCAGCAGAGCTTCCACAGGGTCACACAAagAATGTGAAGTGGAGCGGAGTGGATGTCATTATTCTACACTGCTACAGAGGTGCTGATATGTGTTGAAGATGAGTGGAGTGGGAGAGAACTCTCTGGAGCCGCTGTGCGCCGACCGAAAACGCAAACTCTCCACCTGTGACACGCCTGGACTAGGGTGTGATAAGCGGCGGAGAGAACAGGAGTGTAAGTACATCGAGGAACTCGCCGAGCTGATCTCCGCCAACCTCAGCGACATCGACAGCTTCAACGTCAAACCAGACAAATGCGCCATCCTTAAAGAGACAGTGCGCCAGATACGGCAGATCAAAGAGCAGGGAAAAAGCTCATGTGGCGATGATGATGTCCAGAAGGCGGACGTGTCCTCCACAGGTCAGGGGGTCATCGATAAGGATCATCTGGGCCCTCTGCTGTTGCAGGCTCTGGACGGGTTCCTGTTTGTGGTAAACCGTGAAGGCAGCATTGTGTTCGTCTCTGATAATGTGACTCAGTATCTGCAGTACAAGCAGGAGGAGCTCATTAACACCAGCATCTACAACATCCTGCACCAGGACGACAGAGAGGAGCTGCAAAAGAACCTGCCCAAAGCAAACGgACCTAATGGTGTATCATGGGCTGGAGACACCTCTCGTCAGAAGAGCCACACCTTCAATTGCCGCATGCTGGTGAAATTCGGGCATGGAGGCCCGGGCGGagaggatgttgcaggcaggcCGCGATACGAAATCATGCAGTGTTTCGCCCTCACACAGCCTAAAGCCATGATGGAGGAGGGGGAAGaccTGCAGTCGTGTATGATCTGTGTGGCGCGGAGAGTGACTGCAGTGGAGCGGACGGAGAGATTTACCACCCGGCATGAGCTCTCAGGCAAGCTGATTGAAATCGAGCAGCAGAGCACGCTACACACCACCATGCGTCCTGGCTGGGAGGATCTAGTGCGCAGGTGTATGCAGATGTTCCTCAACCGCAATGAAGGCCAGCCCTGGTCCTACAAACGTCACTACCAGGAGGctTACCTGCACGGTCGAGCAGAGACTCCATTGTAccatttctctctgtctgatgGAACACCAGTAACAGCTCAGACTCGCAGTGAACTCTGCCGGAACCCAAACACCAACGAGCCTCTCAGCTTCCTCTCCACTCACCTCCTGCAGAGGGAGCAGAACAGCTACAGGCCAAACCAGGCAGGTGTAATGCGAGCCCAGGGGATCGGAGGTGCCAACCATAATTCCCAAATGAACATGGCTCCTGGTGGGCAGATGGGTATGGGGAATGCCAGGGGCTACGGCGGCATGAACGACCCAGGCCATATGGGgcccagaggaggaggaggtccCATGTACAGCCCTGGCAACAGAATGAATCAGATGAACTCGATGCACCAGGTGAATCAAATGAACCAGATGAACTCTATGAACCAGATGAATCAGATGGGCATGATGAATCAGATGAACGCGATGAATCCTATGAACCAGATGAATTCCATGACCCAGATGAATCAAATGGGCTCTATGAATCAGATGAACTCCATGAATCAGATGAACCATATGAATCAGCATCAGCACCCAGGAATGAATCAGCATCAGCACCCAGGGATGAATCAGCATCAGCACCCACACCAACAGCAGCACTTCCAGAGAGCGGGGGGGTATGGCTTGGGCATGACAAGTCCATCGCATAGCAGCCCGGGTATGAATCCCTCTCAGCAGAGCATCATGGGATCTCCGCGGATACGAGGAAGCCCTAAAATGGGAGCTAGCCCCTTCTCTCCAGGAGgcATGCATTCTCCTATGGGCCCTGTGAGTATGGGTTCCAACAGTGGCGCCTCCGGTCCAGCAGGTAGCAGTACATTCTCAAGCAGCTCCCTGAATGCCCTGCAGGCTATCAGTGAAGGAGTGGGTTCCTCCCTCCAGTCCGCGCTCACCTCCCCGCCTCACAAATCTGACGGTTCTCCCGGCATCAATTCCACACAGTCCAGTCAGTCAAACCATTCGCAAGCGCTAAGTAATAAAGGTGCCGGTGATTGTATAAGCCCCTGCGGTGCTGACCAGCAACAGGCTACTCCATCTGAAACTGGGATAGACAAGCCAGATAGCCAGTCCAGTAAAGATGGTGGGCCTGGGGCTGACAGCACTCTCAGGGGTTCGGACGCGAAAGGCAATAAGAAACTGCTTCAACTGCTGACGTCCCCACCGGAAGAGCTCTCTTTGGGAGCAGGAAACAGCGGACCTGTTCCCGGCCGTGCGTCCACGCCCATGGGTGGCATGGATTCAAAAGAACCTGGGGGCTGCATGACCAGCCCGTCTTCCACAGGAGTGTCCTCGTCCTCTTCGGCTTCGTCACAAGGGCAGCAAGGTTCAGGATGCGTATCGTCTTCGGGCTGCATGGGACATGGGATGGCGTCCCACTCTGTGCAGAAGCACAAGATCCTCCACAAGCTTCTTCAGAACAGTAATACTCCAGACGATGTTGCCCGCATAACGGCCGAGGCCACGGGGAAGGTCGGCCTGGGTTCTGAACACCCGGGCGCAGACGGTTCCGGGCCGGAGGTCAAGCAGGAGCAGCAGAGTCCGAAGAAAACTCATGTCCTGCTTCAGTACCTTCTAAAAAAGGACGATTCCAAGGACTCCTGCATGGCCGAGGGCAAACCCGGATTGGATGAGCTGGAGGGATGTGGGATTGGCACGGGGCCAGGCTCAGGAGTCACAACCTCCAGTGGACAGGAAGCCAAAATTAAGATCGAGCCAGCTGACGAGCTGGAAAGCCTGGAGAGCATTCTAGGAGGTTTAAGGAAACCCGGTCCTGGAATGTTTACTGATACTAGACCTGGAAGTGGGTCAGATGGAGAACACAAGAAAGGGAATGGACCCAACAACACTGGCCATGATCGAGAAGGTGGAGTGATAGGCCCTGGACCTCGGGTACCTTTTCAGAGAGCAGTGTCTGTGGACAGTAAACCTCTAGGTGCAGCAGGAGTAACAGGCAGGAGGAGTGCCCCTTCTTCCCTCATCAAACAGGAGAGCCTGGACAGCCACATTGGCATGGGAGGTCCCAACAAACAAATGGGCATGAACCAGATGCGACCAATGATGGGCTCTGGTGACTGGAGGATGCAGGGTCCCAGTAACAGCCCTGGTGGCACAAATGGTCACCCAGGAATGGGCTGCCCAGGTGTGGATCCAACCCCCAAGGGTATGATGGGAGGCCCAATGATCAACAGATCCAACAGTGTACCCGCTCCCAGATCCATGCTTCAGCAGCAGCTAATGGACATGGGTCCAAATGAAATGGGAATGAATTTGAATGCGTTCAGAGGGCAGCCACATGCTCCCCAGTCTCCTTCGTGGCCCGAATGTGGAATGGGTATTGAGCGAGGTCATGGTGGCAACAGCATGCCATTTGGCAACCCACTGGATGATCTACTGGTACCCCCAGCAACCAGTGAGGGGCAGAGTGATGAGCGAGCACTGTTAGATCAACTGGACTCTCTCCTCAACAACACAGATGTGATTGCCCTGGAGGAAATCGACCGGGCACTCGGGATACCGGACCTTGTTAGTCAGGGCCACAGTTCAGACCAGCCTCCGACCCCCACGGACTCCTTCCCTGGCCCTGGCCCTGCCCCTGACTCTGCAATGGGTATGGACCCTAAAGCCATGTACAGCTCAGGTTATCCAGGCCCACCATCCATGGGTGGCATGCAGGGAGGCTATGGGCCTCGACCCAGTCCTGGTCCTGGTGGCCCTGGTGCTGGCCCAGGTCCTATGCAGGGCCAGCCTGGGCCTGGTTTTAACCCCATGATGGCACAGATGGGTGGGATGGGAGGCATGCACCCCCGAGCTGCCATGATGCGCCCGAGGATGATGAACGCAACCAAGCCCCTCAGactgcagcttcagcagagattACAGGGACAACAGTTTATGAACCAAACCAGGCAAGCAATGGCAGTGAAAATGGAGAATGCACCAGGAGCCAACCCCGGAGTGAGGCCTGGCATGCAGCCCGGCATGGCGGGACAGcctggGTTTCTGAACGCTCAGATGATGGCTCAGCGGAGTCGAGAGATGATGACTCTGCAGATGAGGAGgcagaggatgatgatgattatgcagcagcagcaacagcaagcCGCAGCCGGAGGCTTCAGCCCCCCTCCTAACGTTACCGCCCCCACTGGCATGGATAACCCCATGGGAGGAGCTGCTATGAACCAGCCGGGCCAGCAGCCGTTTAATTATAGTGGAAATTACGGAATGGGCCAACAAGGGGACCCTTCGTTCGTGGGTACTGGCAGCAGCCCTCCTAATATGATGCCTGGCCGCATGGGAGGCCCACAGAATCCCATGATGCAGCAGCACCCTCAGAGCAGCCCCATGTACCAATCAGCAGAGATGAAGGGTTGGGGTCAGGGAGGCATGCCCATGAACAGctCATACCCTCAGCAGCAGTTCCCCCAGCAGGGGGCGGCATCGCAATACGGAGGCATGATGATGAATGGGGCTGTGCAGGGAGGAGTGAATGGGCCTGGACAGATGCCTCCAATGCAAGGGCAAATGGGCATGAACACCATGGGCATGGGTCGCATGCCAGTGGTTCCTGAACAGAAGTACTTGTAGCAGAGAGCAGCCTTATTGAAAAGGTTGAGGAGAACGGAGCCCTGGTCGGGCCGGTCAGTCGGGCAAGTCACAGCCGAG

Function

symbol description
ncoa3 Predicted to enable nuclear receptor binding activity and nuclear receptor coactivator activity. Predicted to be involved in cellular response to hormone stimulus and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including margin; nervous system; neural plate; neural tube; and tail bud. Human ortholog(s) of this gene implicated in obesity. Orthologous to human NCOA3 (nuclear receptor coactivator 3).

NR:

description
PREDICTED: nuclear receptor coactivator 3-like isoform X3

GO: NA

KEGG:

id description
K11256 NCOA3, ACTR, KAT13B; nuclear receptor coactivator 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682761.1 True 4880 mRNA 0.56 25 28459080 28507556

Neighbor

gene id symbol gene type direction distance location
LOC103024327 NA coding downstream 129792 28323355 ~ 28329288 (-)
LOC111195424 NA coding downstream 151032 28302568 ~ 28308048 (-)
LOC111195423 NA coding downstream 158072 28296305 ~ 28301008 (-)
LOC103025279 tmcc1b,LOC108436190,LOC107746889,LOC107755185,LOC107696833,LOC107656050 coding downstream 164112 28269957 ~ 28294968 (-)
LOC103044024 LOC108436218 coding downstream 191140 28253784 ~ 28267940 (-)
LOC103046446 LOC108436063,LOC107728611,LOC107656039,LOC107600301 coding upstream 39023 28546579 ~ 28570942 (-)
LOC103042433 taf4,LOC108436032 coding upstream 644165 29151721 ~ 29173495 (-)
LOC103040895 LOC108436021 coding upstream 669790 29177346 ~ 29219008 (-)
LOC103042113 LOC103042113,LOC108435091 coding upstream 725956 29233512 ~ 29254829 (-)
LOC103040276 NA coding upstream 762365 29269921 ~ 29278564 (-)
G193435 qrich1,LOC107729405,LOC107558890 non-coding downstream 140376 28317344 ~ 28318704 (-)
G193426 NA non-coding downstream 214378 28243808 ~ 28244702 (-)
G193424 NA non-coding downstream 222611 28235165 ~ 28236469 (-)
G193411 NA non-coding downstream 292999 28165841 ~ 28166081 (-)
G193386 NA non-coding downstream 391399 28067474 ~ 28067681 (-)
G193540 NA non-coding upstream 88095 28595651 ~ 28596007 (-)
G193568 NA non-coding upstream 368361 28875917 ~ 28930921 (-)
G193637 NA non-coding upstream 668358 29175914 ~ 29176124 (-)
G193638 NA non-coding upstream 668899 29176455 ~ 29176865 (-)
LOC111195426 NA non-coding upstream 720148 29227704 ~ 29232967 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other downstream 246010 28194379 ~ 28213070 (-)
tmem167b tmem167b other downstream 443468 28010991 ~ 28015612 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other downstream 757749 27425042 ~ 27701331 (-)
LOC111195340 NA other downstream 1067509 27390794 ~ 27391571 (-)
G193097 NA other downstream 1425991 27031663 ~ 27033089 (-)
LOC111195343 LOC108434908 other upstream 68551 28576107 ~ 28586222 (-)
G193541 NA other upstream 89999 28597555 ~ 28598638 (-)
G193737 NA other upstream 1658205 30165761 ~ 30180126 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other upstream 2302238 30809794 ~ 30830957 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other upstream 2662742 31170298 ~ 31194049 (-)

Expression


Co-expression Network