LOC103040895 (LOC108436021)


Basic Information

Item Value
gene id LOC103040895
gene name LOC108436021
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 29177346 ~ 29219008 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682769.1
CACTCTTCAGTCTGCTCAAgttagagtgtgtgagtgtgtgtgtgtgagacactggggagagagaggggctAGTCAGGCTGGGATAAAGTGAATGTATCAGAGTAGCCTGAGTGAAGTGGGAGAGACCgagactgacagacagataaacagacagatagataatcAGGTGTAGCATGTGGTGTGCTGGTCCTGCTGCTGGTGCCATGGTagtggagtgtgtgtaagtgaagaTTCAGTCCAGTGTGTGGTTTCTTTCtttatgagtgagtgagtgattgagtgTGTGCATCTGGAGCCACAGGGATCATGAGCTCTAAGGGCACCAACCTGCACAACAAACGACTACCATCTGAAACAGAACACGCTCAGAGGGTGCCAGACATGGACGCGGCCCAGCAGCTGAAACTGAGAGAGAGGCAGCGCTTCTTTGAGGAGGTCTTTCAGCATGACGTGGACGTGTACCTCTCCTCAGCTCACCTGCAGATAGATTACAAAAGACCTCCCATGGGCAGCATCTCTTCCATGGAGGTGAATGTGGACATGCTGGAGCAGATGGAGTTGATGGACATCTCGGATCAGGAGGCTCTGGATGTGTTTCTGGGAACGAGTGGAGACGATGATGCACTCCCATCCCCACTACCAGCTCTCAGTTGCGATACCGACGACAACGATGAAGAAATCTCCCTGAGAGTTCCAGATAGCTGTGAGATCAAATCACGAATGTCCTCCACCTCGTCCAACTCCACCTCCGACAGTCAGGCCACCAATGAGGACGGAGCAGCAACTCCTGTCGTCCAATCAGATGAAGAGGACGTTCAAGACGACGATAGCCTTTTGACAACAGCAGCGTCCCCAGCCGAAGGTGCTGGAGAAGCCCAGGCTGAGCTGTCTGTATAAAGAACCTGGTCAATTTCTACTGATCGATCAACTAACATGATGATGTTTCTCTATTAATAAGGACTTTTTTCTGGTGGGTTGATAGATTCTGACTATGTACCAATCTACCAAAGACTGTAATGGACTCTTACACGCACATGATTCTTCCTCTTAAAGAAATGCCCTCCTTCACCTGAACTGCtgctgtaaataatacaaatcaaACTAAGGCTTCTAGAGGTTTGCAGACATGGCATGTTCCTACAGCATCTGTTTGTCTTGGATTTGTATCGCCTCATTAATGACTGTGTTGATTTAGATGTCATCATTGTAGAAAAGTGTCATTATTTGACACCATATTTATGATTGATTATTAACATTGCCAATGTATAAAAGTGTACTATTTCTGCAGATTGGTGCTGCTTAGATCTCTAACTTTTGGTGCGCCAGTTGTTCAGATGTCATATACGTCCACCATCTAACTTTCCATGTTGTCGTCTTTCTCacaaagttctttttttttgttgttttgtgttcttAAGCCGTCTTCCCTCTGATCTCCACAATACCTTATATTTTGCTATCAAAATAAAGCCAATGCCAACTTTGAAAGA
>XM_022682770.1
GCTCAAgttagagtgtgtgagtgtgtgtgtgtgagacactggggagagagaggggctAGTCAGGCTGGGATAAAGTGAATGTATCAGAGTAGCCTGAGTGAAGTGGGAGAGACCgagactgacagacagataaacagacagatagataatcAGGTGTAGCATGTGGTGTGCTGGTCCTGCTGCTGGTGCCATGGTagtggagtgtgtgtaagtgaagaTTCAGTCCAGTGTGTGGTTTCTTTCtttatgagtgagtgagtgattgagtgTGTGCATCTGGAGCCACAGGGATCATGAGCTCTAAGGGCACCAACCTGCACAACAAACGACTACCATGTAAACTACAGGTTGGACATCTGAGAAATATTAGCTGAAACAGAACACGCTCAGAGGGTGCCAGACATGGACGCGGCCCAGCAGCTGAAACTGAGAGAGAGGCAGCGCTTCTTTGAGGAGGTCTTTCAGCATGACGTGGACGTGTACCTCTCCTCAGCTCACCTGCAGATAGATTACAAAAGACCTCCCATGGGCAGCATCTCTTCCATGGAGGTGAATGTGGACATGCTGGAGCAGATGGAGTTGATGGACATCTCGGATCAGGAGGCTCTGGATGTGTTTCTGGGAACGAGTGGAGACGATGATGCACTCCCATCCCCACTACCAGCTCTCAGTTGCGATACCGACGACAACGATGAAGAAATCTCCCTGAGAGTTCCAGATAGCTGTGAGATCAAATCACGAATGTCCTCCACCTCGTCCAACTCCACCTCCGACAGTCAGGCCACCAATGAGGACGGAGCAGCAACTCCTGTCGTCCAATCAGATGAAGAGGACGTTCAAGACGACGATAGCCTTTTGACAACAGCAGCGTCCCCAGCCGAAGGTGCTGGAGAAGCCCAGGCTGAGCTGTCTGTATAAAGAACCTGGTCAATTTCTACTGATCGATCAACTAACATGATGATGTTTCTCTATTAATAAGGACTTTTTTCTGGTGGGTTGATAGATTCTGACTATGTACCAATCTACCAAAGACTGTAATGGACTCTTACACGCACATGATTCTTCCTCTTAAAGAAATGCCCTCCTTCACCTGAACTGCtgctgtaaataatacaaatcaaACTAAGGCTTCTAGAGGTTTGCAGACATGGCATGTTCCTACAGCATCTGTTTGTCTTGGATTTGTATCGCCTCATTAATGACTGTGTTGATTTAGATGTCATCATTGTAGAAAAGTGTCATTATTTGACACCATATTTATGATTGATTATTAACATTGCCAATGTATAAAAGTGTACTATTTCTGCAGATTGGTGCTGCTTAGATCTCTAACTTTTGGTGCGCCAGTTGTTCAGATGTCATATACGTCCACCATCTAACTTTCCATGTTGTCGTCTTTCTCacaaagttctttttttttgttgttttgtgttcttAAGCCGTCTTCCCTCTGATCTCCACAATACCTTATATTTTGCTATCAAAATAAAGCCAATGCCAACTTTGAAAGA
>XM_022682771.1
GGCTAGGATGATTGACATGCCTGTGCAGTCTCAGCATTGAAGAACTTGAGTGGAGTCTGGAGACTGAATGATGTACTGAAGTCGGCGGCAGCATAGTGCAGAACACTGAAACAGAACACGCTCAGAGGGTGCCAGACATGGACGCGGCCCAGCAGCTGAAACTGAGAGAGAGGCAGCGCTTCTTTGAGGAGGTCTTTCAGCATGACGTGGACGTGTACCTCTCCTCAGCTCACCTGCAGATAGATTACAAAAGACCTCCCATGGGCAGCATCTCTTCCATGGAGGTGAATGTGGACATGCTGGAGCAGATGGAGTTGATGGACATCTCGGATCAGGAGGCTCTGGATGTGTTTCTGGGAACGAGTGGAGACGATGATGCACTCCCATCCCCACTACCAGCTCTCAGTTGCGATACCGACGACAACGATGAAGAAATCTCCCTGAGAGTTCCAGATAGCTGTGAGATCAAATCACGAATGTCCTCCACCTCGTCCAACTCCACCTCCGACAGTCAGGCCACCAATGAGGACGGAGCAGCAACTCCTGTCGTCCAATCAGATGAAGAGGACGTTCAAGACGACGATAGCCTTTTGACAACAGCAGCGTCCCCAGCCGAAGGTGCTGGAGAAGCCCAGGCTGAGCTGTCTGTATAAAGAACCTGGTCAATTTCTACTGATCGATCAACTAACATGATGATGTTTCTCTATTAATAAGGACTTTTTTCTGGTGGGTTGATAGATTCTGACTATGTACCAATCTACCAAAGACTGTAATGGACTCTTACACGCACATGATTCTTCCTCTTAAAGAAATGCCCTCCTTCACCTGAACTGCtgctgtaaataatacaaatcaaACTAAGGCTTCTAGAGGTTTGCAGACATGGCATGTTCCTACAGCATCTGTTTGTCTTGGATTTGTATCGCCTCATTAATGACTGTGTTGATTTAGATGTCATCATTGTAGAAAAGTGTCATTATTTGACACCATATTTATGATTGATTATTAACATTGCCAATGTATAAAAGTGTACTATTTCTGCAGATTGGTGCTGCTTAGATCTCTAACTTTTGGTGCGCCAGTTGTTCAGATGTCATATACGTCCACCATCTAACTTTCCATGTTGTCGTCTTTCTCacaaagttctttttttttgttgttttgtgttcttAAGCCGTCTTCCCTCTGATCTCCACAATACCTTATATTTTGCTATCAAAATAAAGCCAATGCCAACTTTGAAAGA

Function

NR:

description
PREDICTED: dysbindin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682769.1 False 1490 mRNA 0.46 4 29177346 29212246
XM_022682770.1 True 1511 mRNA 0.46 5 29177346 29212233
XM_022682771.1 False 1246 mRNA 0.45 4 29177346 29219008

Neighbor

gene id symbol gene type direction distance location
LOC103042433 taf4,LOC108436032 coding downstream 3851 29151721 ~ 29173495 (-)
LOC103046446 LOC108436063,LOC107728611,LOC107656039,LOC107600301 coding downstream 606404 28546579 ~ 28570942 (-)
LOC103043100 ncoa3,LOC108436109,LOC108255004,LOC107717960 coding downstream 669790 28459080 ~ 28507556 (-)
LOC103024327 NA coding downstream 848058 28323355 ~ 28329288 (-)
LOC111195424 NA coding downstream 869298 28302568 ~ 28308048 (-)
LOC103042113 LOC103042113,LOC108435091 coding upstream 14504 29233512 ~ 29254829 (-)
LOC103040276 NA coding upstream 50913 29269921 ~ 29278564 (-)
cse1l cse1l,LOC107750990,LOC107699361 coding upstream 61142 29280150 ~ 29291603 (-)
ptprg ptprg,ptprga,LOC107752167,LOC106583020 coding upstream 83526 29302534 ~ 29759625 (-)
LOC103043315 NA coding upstream 1499968 30718976 ~ 30720245 (-)
G193638 NA non-coding downstream 481 29176455 ~ 29176865 (-)
G193637 NA non-coding downstream 1222 29175914 ~ 29176124 (-)
G193568 NA non-coding downstream 246425 28875917 ~ 28930921 (-)
G193540 NA non-coding downstream 581339 28595651 ~ 28596007 (-)
G193477 NA non-coding downstream 707738 28395697 ~ 28469608 (-)
LOC111195426 NA non-coding upstream 8696 29227704 ~ 29232967 (-)
G193642 NA non-coding upstream 44966 29263974 ~ 29266389 (-)
G193649 NA non-coding upstream 77793 29296801 ~ 29297084 (-)
G193652 NA non-coding upstream 160739 29379747 ~ 29380489 (-)
G193662 NA non-coding upstream 365444 29584452 ~ 29584846 (-)
G193541 NA other downstream 578708 28597555 ~ 28598638 (-)
LOC111195343 LOC108434908 other downstream 591124 28576107 ~ 28586222 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other downstream 964276 28194379 ~ 28213070 (-)
tmem167b tmem167b other downstream 1161734 28010991 ~ 28015612 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other downstream 1476015 27425042 ~ 27701331 (-)
G193737 NA other upstream 946753 30165761 ~ 30180126 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other upstream 1590786 30809794 ~ 30830957 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other upstream 1951290 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other upstream 1955799 31174807 ~ 31174878 (-)
cadps cadps,LOC107549847 other upstream 2231795 31450803 ~ 31654210 (-)

Expression


Co-expression Network