gnl3


Basic Information

Item Value
gene id gnl3
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 30847297 ~ 30856549 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682784.1
AAAAAATTAACCATTTCGGTTCAGACGGCGGAAACGGAAACCGTGCGCGCGCTCGCTGCACGCGCTGCTCCATTGGTTTCAGTGCACGTGTgcgaacagcagcagcagccgccgAGAGAGAGCCATGAAGCGACCGAAGTTAAAGAAGGGAAGCAAGCGCGTATCCTGCGCTAAACGCTTCAAAATTCAGAAAAAGGTTCGGGAACACCACAAAAAATTACGGAAGGAGGCGAAGAAAAGTGGAATCAAGAGAAAGCTCAAGAAGGACATTGAAGTACCAAACAGTGCTCCATTTAAGGAAGAGGTCCTTAGAGAAGCAGAGCAGAGGAAACAGGAGCTTGAAGAGCTGAAGGAAAAGAACAGACTAGCCAAGCAGAAGGAGCgagcagagaagagaaaggcGGCCAAAGATGGCGTCAGTGGTGCTGAGGAGCCAAAGTCAAAGAGAGTTAAAAAGGAGGAGAAGGTAAAGGCTCAGAGGCAAGCTAGGGCAGCTGTCGCCAAGGAGAAAAGCAACAAGGTGTTCAGATGCAAGGAGCTGAATAAGGTCATCGAAGCATCAGATGTTATAATAGAAGTTCTGGATGCAAGGGATCCTTTGGGCTGCCGCTGTCCTCAGCTAGAGGAGGCAGTGCTGAAACATGAGGGGAAGAAAAGACTGCTGTTTGTGATGACAAAGATAGATCTTGTTCCTAAAGAGAATTTAGAGAAGTGGGTTGAATATCTTAAAGAAGAGTGTCCAACGTTTGTCTTCAAAGCATGCATGCGGATACAGGATAAGACTGTGATGGAGAAGAAGCaaaaagccaatggaaaagtgGACCTCAGCAGAGCAGCATCTTCGTTTGGTTGTGATTCTTTAATGCAGACCCTTTCAGACTTGTCCAACAAGCTTGAAAGTGAGAGCATGCTGAAAGTTGGCATTGTTGgttttcctGGTGTGGGAAAAAGCAGTATTATTAACTCTCTGAAGGGCATCAGAGCATGCCATGCTGGTGTACAGCGAGGACTGACAAAGTGTATGCAGGAAGTGCATATCTCCAAGAAGGTGAAGATGATTGACAGTCCAGCAATGGTGGCAGCTCCATCCAGTTCTGGAGAAAAGCTGGTTTTGAGGAGTCTACAGGTGGAGGAGAATGAGGCGAGTCCTTTGGAGGCAGTGCAAACATTGCTGAAACATTGCAACCAACAAGATATCATGCTGGAGTACACCGTTCCAGACTACAGAAACGCTCTGGAGTTTTTAACCCTTTTTGCCAAGAAGCGTGGGTTCCTGCAGAAAGGTGCACTGCCCAACGTAGAACAGGCTGCAACTGTGTTTCTCAATGACTGGACCGGACCTAAACTAAGTTACCATACCAAAGTACCAGAGCGACAGGGCCTGCCTCCACACCTCACTGAAGATCTGGTTGCACAGATGCAGGCTGGCATGAACTTGGATAAGATGAACATGGCGAACGTGCAGATCATCAAATgCATACGATGCCCTAACAAGGCGAGCAGCATTCCTTTCAACTCGAAGAATATGACTGATGGTATTCTGAGTGTCAGTGAGCTACCAGCAGTAAAGCCTGCagtagaggaggaggagaagaaggaggaggagcagaCAGAGAATCTTGAGGAAACTGAGGATGCTGAGGAGATTGAGACTCCTGAGTCAGAAGTGGTACAGACTCCAAAACCATCTCAGAAGAAAAATGCACGGAAGCGAGCGAAAGCAAAGGCCACGCCAGCACATGTCAGCTTTGACCTGCCGGCTGCACAGCAGAATGATGATGAAGCTTATGATTTCAACACAGACTTTGTATAAATGTTTGTGTCTACACAACAGAGAgcagagtgtttgtgtgtgtatgtgtggaggTCTGATGAGGCTGATTTGTCGGATgttctgtatttctgtctgtctgacagGACCTGTTGTAAATATGAGACAGATAATTAAACTTTTGATCTTCTGAGATTTCTA

Function

NR:

description
guanine nucleotide-binding protein-like 3 isoform X2

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process
GO:0003407 neural retina development biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0007096 regulation of exit from mitosis biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0005730 nucleolus cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K14538 NUG1, GNL3; nuclear GTP-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682784.1 True 1972 mRNA 0.47 15 30847297 30856549

Neighbor

gene id symbol gene type direction distance location
LOC103040946 LOC108435972,LOC107714490,LOC107566450,LOC108254900 coding downstream 44789 30729235 ~ 30802508 (-)
LOC103043315 NA coding downstream 127052 30718976 ~ 30720245 (-)
ptprg ptprg,ptprga,LOC107752167,LOC106583020 coding downstream 1087672 29302534 ~ 29759625 (-)
cse1l cse1l,LOC107750990,LOC107699361 coding downstream 1555694 29280150 ~ 29291603 (-)
LOC103040276 NA coding downstream 1568733 29269921 ~ 29278564 (-)
sfmbt1 sfmbt1 coding upstream 339273 31195822 ~ 31230829 (-)
LOC103036366 prkcd,prkcdb,LOC108435819,LOC107696837,LOC107728641,LOC107656045,LOC107600299 coding upstream 381922 31238471 ~ 31287104 (-)
LOC103035852 LOC108435806 coding upstream 449018 31305567 ~ 31370546 (-)
fezf2 fezf2,fezf1,LOC108247338,LOC106530279 coding upstream 574342 31430891 ~ 31435487 (-)
LOC107197084 NA coding upstream 883322 31739871 ~ 31747170 (-)
G193846 NA non-coding downstream 1341 30844055 ~ 30845956 (-)
G193818 NA non-coding downstream 118435 30724432 ~ 30728862 (-)
G193770 NA non-coding downstream 246399 30537778 ~ 30600898 (-)
G193764 NA non-coding downstream 342260 30436885 ~ 30505037 (-)
G193736 NA non-coding downstream 638319 30156138 ~ 30208978 (-)
G193866 NA non-coding upstream 37078 30893627 ~ 30911740 (-)
G193886 NA non-coding upstream 111770 30968319 ~ 30983362 (-)
G193889 NA non-coding upstream 154738 31011287 ~ 31011543 (-)
G193891 NA non-coding upstream 162198 31018747 ~ 31019226 (-)
G193959 itih3,LOC108435863,LOC105912272,LOC101062864,LOC101070262 non-coding upstream 281425 31137974 ~ 31168883 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other downstream 16340 30809794 ~ 30830957 (-)
G193737 NA other downstream 667171 30165761 ~ 30180126 (-)
G193541 NA other downstream 2248659 28597555 ~ 28598638 (-)
LOC111195343 LOC108434908 other downstream 2261075 28576107 ~ 28586222 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other downstream 2634227 28194379 ~ 28213070 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other upstream 313749 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other upstream 318258 31174807 ~ 31174878 (-)
cadps cadps,LOC107549847 other upstream 594254 31450803 ~ 31654210 (-)

Expression


Co-expression Network