sfmbt1 (sfmbt1)


Basic Information

Item Value
gene id sfmbt1
gene name sfmbt1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 31195822 ~ 31230829 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682786.1
GCAATGTTGCGCCCCTCTATTGGTCACTGTTTGTAGCTTATTAAAGCGGAAACGGGCCGGCTCGTGCAGTAAACCCGAGCTTTCCTGTAGAGCGCGTGTTCGTAGGGAGTTATCAGCGCGAGAGCCGCGTTATTATCTCGCTTTAttcgcttaaaaaaaaaagagcccgAGCACAACAACGTGGATGGGGAGGTGAGGTGAGGCGGCGGCGGCGCATGCGCGGTGGGACTTTGTGCCATATTGGAATGAGGTCGTGAACGACTGAAGGCGGAAAAAAAAGACACGGCATCTGAAACCGACTTGGAAAAAAACTCCTCAGCGGCGAGAAACGCTTCCAGACTTTATATTTGCACGTCGGAGAGCCCGAAGCACCGAACCGGACTGTCGGCCGTGAGATCCAGTTCCAGAATGAGTGTAGAAGCACTGGAGTCCGATGCGGACTCTGGTCAGGACATGTCTGAGTTTAACTGGGATGATTATCTGGAGGAGACGGGCGCGCTGTCCGTACCCCACCATGCCTTCAAACACATGGATCAGGGGCTGCAGACCGGTCTGGCTCCCGGTATGAAGCTGGAGGTGCTGGTGCGGAGCGAGGGAGACGAGGCCTACTGGGTctccaccatcatcaccacatgtgggcagctgctgctgcttcgcTATGAGGGATACCAGGATGACCGGCGGGCGGATTTCTGGTGCGACATCACGACAGCTGACCTGCACCCTATTGGATGGAGTAAACAACAGGGTCGACCAATGAAACCACCGGAAGgtgttcgGGAGAAGCATCAGGACTGGGAGGCCCTGCTGGAGAAAGCTCTGTCCCTGTCCGAGTCCTGCAGCGCACCCGCCAGTCTGCTGGAGGGGGCCCAGCGTGGCTGTAACCCTGTAGACCTGCTCAGTACAGGCCTCAGTGTGGAGCTGGTGGATAACCAGGATGCAGCAGCGGCTTGGTGTGCAGTGATCGAGGATAACGTTGGGGGGCGGCTTCGTCTTCGCTACAGCGGCACTGAGGGGCTTCCTGATGCCCAATCCATCACCTGGGTCTTTTACTTGAACCCCCTGCTCCACTTACCTGGCTGGGCCAAAGAACATGgcctcactttcagacctccATCAGctCTGCTCCCGTTGCATACTGAGGAAGAATGGGAGGGAGTGAGACAGACCATTTCCACCCAGTCACAGGACTCCAGCATCAGTGAAGAATTCTATAAGGATCGACCCGccatcactacacactgcttCACCGAGGGAATGAAGCTGGAGGCAGCAGATCCTGCTGCACCTTTCACCATCAGTCCTGCTACTGTAGCTAAGGTGTTTGGTGATCAGTGGTTCCTAGTGCAGATGGATGATCtgagggaggaagagaagagagagggtcGTCGAGCGTTTCTGTGCCACAAAGATAGTCCGGGAATCTTCCCCACCCAGTGGAGCCTGAAGAATGGAGTCAAACTCAGCCCTCCACCAGggtatCAAGgacaggactttgactgggctgACTATTTGAAACAGTGTGAGGCAGAAGCAGCTCCGCAGCACTGTTTCCCCCCTGACCCCTCTGATCAGTGCTTTAAGGAGTCCATGATGCTGGAGGCTGTGAACCCTCTTTGTCCAGAAAACATTCACGTAGCAACAGTTACCAAGGTCAAAGGCCAGCATATCTGGATTCGATTGGAAGGAGTGAAGCAACCTGTCCCAGAGATCATAGTTCATATGGACTCTATGGACATCTTCCCAGTTAGCTGGTGTGAGACTAACGGTTACCCTCTCCAGTACCCCTGCAAGCCCAAAGTTGAAAAGCAGAAGAAAATTGCTGTAGTTCAACCAGAAAGACACAGAGCCCTGTCTAAAGACTCCTCCCCCGATGCCCTCAAACAGCCCCTCGGCAGCCAAACAGAGATGAGTCAGGCCAATGGAAAATACTGTTGCCCCAAGATTTATTTCAACCACAGATGCTTCTCTGGGCCGTACCTCAACAAGGGACGCATTGCAGAGCTCCCGCAGTGTGTGGGTCCAGGGAACTGTGTTCTAGTTCTGAAAGAGGTCCTGACCTTGCTAATAAACTCCGCCTACAAGCCCAGCCGTGTGCTGCGGGAGCTGCAGCTGGACCAGGAGGGCCGGTGGCAGGGCCACGGAGAGACGCTCAAAGCCAAGTATAAAGGAAAGAGCTACAGGGCGACAGTAGAGATTGTTCGGACTGCGGACCGCGTGGCCGAGTTCTGCAGGAAGACCTGCATTAAGTTGGAGTGCTGCCCCAACCTGTTCGGACCACGCATGGTCCTGGAGCGCTGCTCAGAGAACTGCTCAGTCCTCACCAAAACCAAATACACTTATTACTATGGGAAGAAGAAGAGTCGCCGTGTGGGTCGTCCCCCGGGAGGCCACTCTAACCTGGAGGGGGGTGTGAAGAAGAgaggcaggaggaggaagaggaggaagcagCTCTTTGTCCACAAAAAGAGACGCTCCTCTGCCTCAATGGACAACACACCTGCAGGGTCTCCTCAGGGAAGTGGTGATGAGGAAGACCTGGATGAAGATGACTCCCTGAGCGAGGACACCGGCTCTGAGCTGCAGGACGAGTTGATGGACGACTCCGAATACTCAGAAAAGAAGTCACAGCCTCCGACCCCCTCCCCTTCCCCCCCCGAGACTCCTCGACCCTCCCGCCGCCGCCGCAAAGCTCGCTCTCCATCGTACTCAGACGACGAGAACAGACCCCCCTCGCCCAAGAGTCCGTATAGCGAGGCTCCTCAGAAGCTGTGTTTAGACAGCAGTCCGTTAGAATGGAGCGTCACGGATGTGGTGCGTTTCATCAGGACCACTGACTGTGCTCCACTGGCTCGCATCTTCATGGACCAgGAGATCGATGGTCaggccctgctgctgctgaatcTGCCCACAGTGCAGGAGTGTATGGACCTAAAACTGGGTCCCGCCATTAAACTGTGCCACCATATCGAAAGGGTCAAACTGGCATTTTACCAGCAGTTTGCCAGCTGAGGGTGATCTTACTCCTGAAGGAAGGAGAGGAGAGTGGGGGGAGGGGGGCATCAGAGCTTTCCTTTTGCTATTCCTTTCAGcttggttagtgtgtgtgtgtgatggcaATATGCTACTGATGGGgaattgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgagagagagagtttgtgtgtgtgtgtgtttaatgctcTCAGATCAGACTGAAACTTGTTGTACAGTGTAGATCAAATTCATGGAGGTTCTTCGTTGGAAGATCTTCTGGTTTAATGTTGGGGTTTAAACTCAGCCATAGAAAGTCATAGTCCCATCTGTTTTTCATAAAACTCAGCCAAGCTTCTCATTTCTTGAAACCTTTAATAATcgtacactttttaaaatgaaggtGCTACAAAAGGTTATTTGAGTGATACCATTTAGATAACCATTTTTgtctccattaaaaaaaaaataaataaattggcaTATTTTTGGCATTGGCATAtatttttgatagtctggaaattaaatgtattttgcatTGATGCAAATGATACAAATCCATTTCAAACCGAATCCAAATGTAGTTTGGATCCAGTTTGccaaaaatcctttttttatgtggtttctgtCTGTTCAGACTATGAAAAATCAATCTCAATACAATCTACATGTTTGAGCTGGTGGTCTGAACCTGGAAATTAACAGGTAAGTAAAACCGGGTGTGCTTGAGTTGAATCCGGACCCCCAGGACTAGATTTTCCCCACCCCTGTTCTGTGGTATCGctcaaaaaaatcttttatagcacctttaattgtttttaaagagTGTAGAGCGGACGACAATGCAAGAATCTTAAGCACAAAGACCAATTGCCCATGTACTGTAAGTGGTATGCAAAAGTGTACATAGTGGAGTTTGTGTGTACATACTGTAAATAGCAGATATTCCTTTTAGAGGGACGAAACTGTCCCTGTTTCTGTTTGGTTTTCTACAGAGTTTGAGGATTACACTGTAAGTAAACGAGAACATTATTTTTCAGGCATCTTCTGCCTGGTGTTTGGTATTGCTGTGGGATTTTGTATAGATGCTAATTACACTGTCCCTGCTGTTTGACGCTCAAACGATCAAACAGAGACGTGttgctgaaaaaaattaaaataaatctaatgtaatataatggaTAATAACATAACAGAATTGAATTGTGATTGTTGTTGTGGTTAGGATTCAAGCACATGAAGGTTCCAGGTTATTGTAGTCCATTCTGATGGTCCAGATTCCAGGAACTGCTcaaatttatatacagtacagtaaaatatGTTTGTCTAAGATTCATCATAAGTGGACCCCTTATATAAACTGAATTTTGATTGCtttcaagagaaaaaaaatccatacttTAATTGCGCATCCATTTCCATCATTCTTTCAGAAATAAGCATTTGTGCTGAAATGTGAAAGGTGTTTTTGTTGGCATATTCTATGTCTTCTGGCCatgttatatttttgtttctttcctttttcctcCCATATTTTGAGAGTTTGGTCAAAGAATGTTGGAATTATTGTTAATTTGAcctttaaatgtatatgtttgtgatgtggtatttaaatgaaataaactaaaccaGATCTAATGCCTTGTCTCTTTCAGGAgtgtaaataaaatcacagttaaaTCCAG
>XM_022682787.1
CTGCAATGTTGCGCCCCTCTATTGGTCACTGTTTGTAGCTTATTAAAGCGGAAACGGGCCGGCTCGTGCAGTAAACCCGAGCTTTCCTGTAGAGCGCGTGTTCGTAGGGAGTTATCAGCGCGAGAGCCGCGTTATTATCTCGCTTTAttcgcttaaaaaaaaaagagcccgAGCACAACAACGTGGATGGGGAGGTGAGGTGAGGCGGCGGCGGCGCATGCGCGGTGGGACTTTGTGCCATATTGGAATGAGGTCGTGAACGACTGAAGGCGGAAAAAAAAGACACGGCATCTGAAACCGACTTGGAAAAAAACTCCTCAGCGGCGAGAAACGCTTCCAGACTTTATATTTGCACGTCGGAGAGCCCGAAGCACCGAACCGGACTGTCGGCCGTGAGATCCAGTTCCAGAATGAGTGTAGAAGCACTGGAGTCCGATGCGGACTCTGGTCAGGACATGTCTGAGTTTAACTGGGATGATTATCTGGAGGAGACGGGCGCGCTGTCCGTACCCCACCATGCCTTCAAACACATGGATCAGGGGCTGCAGACCGGTCTGGCTCCCGGTATGAAGCTGGAGGTGCTGGTGCGGAGCGAGGGAGACGAGGCCTACTGGGTctccaccatcatcaccacatgtgggcagctgctgctgcttcgcTATGAGGGATACCAGGATGACCGGCGGGCGGATTTCTGGTGCGACATCACGACAGCTGACCTGCACCCTATTGGATGGAGTAAACAACAGGGTCGACCAATGAAACCACCGGAAGgtgttcgGGAGAAGCATCAGGACTGGGAGGCCCTGCTGGAGAAAGCTCTGTCCCTGTCCGAGTCCTGCAGCGCACCCGCCAGTCTGCTGGAGGGGGCCCAGCGTGGCTGTAACCCTGTAGACCTGCTCAGTACAGGCCTCAGTGTGGAGCTGGTGGATAACCAGGATGCAGCAGCGGCTTGGTGTGCAGTGATCGAGGATAACGTTGGGGGGCGGCTTCGTCTTCGCTACAGCGGCACTGAGGGGCTTCCTGATGCCCAATCCATCACCTGGGTCTTTTACTTGAACCCCCTGCTCCACTTACCTGGCTGGGCCAAAGAACATGgcctcactttcagacctccATCAGctCTGCTCCCGTTGCATACTGAGGAAGAATGGGAGGGAGTGAGACAGACCATTTCCACCCAGTCACAGGACTCCAGCATCAGTGAAGAATTCTATAAGGATCGACCCGccatcactacacactgcttCACCGAGGGAATGAAGCTGGAGGCAGCAGATCCTGCTGCACCTTTCACCATCAGTCCTGCTACTGTAGCTAAGGTGTTTGGTGATCAGTGGTTCCTAGTGCAGATGGATGATCtgagggaggaagagaagagagagggtcGTCGAGCGTTTCTGTGCCACAAAGATAGTCCGGGAATCTTCCCCACCCAGTGGAGCCTGAAGAATGGAGTCAAACTCAGCCCTCCACCAGggtatCAAGgacaggactttgactgggctgACTATTTGAAACAGTGTGAGGCAGAAGCAGCTCCGCAGCACTGTTTCCCCCCTGACCCCTCTGATCAGTGCTTTAAGGAGTCCATGATGCTGGAGGCTGTGAACCCTCTTTGTCCAGAAAACATTCACGTAGCAACAGTTACCAAGGTCAAAGGCCAGCATATCTGGATTCGATTGGAAGGAGTGAAGCAACCTGTCCCAGAGATCATAGTTCATATGGACTCTATGGACATCTTCCCAGTTAGCTGGTGTGAGACTAACGGTTACCCTCTCCAGTACCCCTGCAAGCCCAAAGTTGAAAAGCAGAAGAAAATTGCTGTAGTTCAACCAGAAAGACAAGCCCTGTCTAAAGACTCCTCCCCCGATGCCCTCAAACAGCCCCTCGGCAGCCAAACAGAGATGAGTCAGGCCAATGGAAAATACTGTTGCCCCAAGATTTATTTCAACCACAGATGCTTCTCTGGGCCGTACCTCAACAAGGGACGCATTGCAGAGCTCCCGCAGTGTGTGGGTCCAGGGAACTGTGTTCTAGTTCTGAAAGAGGTCCTGACCTTGCTAATAAACTCCGCCTACAAGCCCAGCCGTGTGCTGCGGGAGCTGCAGCTGGACCAGGAGGGCCGGTGGCAGGGCCACGGAGAGACGCTCAAAGCCAAGTATAAAGGAAAGAGCTACAGGGCGACAGTAGAGATTGTTCGGACTGCGGACCGCGTGGCCGAGTTCTGCAGGAAGACCTGCATTAAGTTGGAGTGCTGCCCCAACCTGTTCGGACCACGCATGGTCCTGGAGCGCTGCTCAGAGAACTGCTCAGTCCTCACCAAAACCAAATACACTTATTACTATGGGAAGAAGAAGAGTCGCCGTGTGGGTCGTCCCCCGGGAGGCCACTCTAACCTGGAGGGGGGTGTGAAGAAGAgaggcaggaggaggaagaggaggaagcagCTCTTTGTCCACAAAAAGAGACGCTCCTCTGCCTCAATGGACAACACACCTGCAGGGTCTCCTCAGGGAAGTGGTGATGAGGAAGACCTGGATGAAGATGACTCCCTGAGCGAGGACACCGGCTCTGAGCTGCAGGACGAGTTGATGGACGACTCCGAATACTCAGAAAAGAAGTCACAGCCTCCGACCCCCTCCCCTTCCCCCCCCGAGACTCCTCGACCCTCCCGCCGCCGCCGCAAAGCTCGCTCTCCATCGTACTCAGACGACGAGAACAGACCCCCCTCGCCCAAGAGTCCGTATAGCGAGGCTCCTCAGAAGCTGTGTTTAGACAGCAGTCCGTTAGAATGGAGCGTCACGGATGTGGTGCGTTTCATCAGGACCACTGACTGTGCTCCACTGGCTCGCATCTTCATGGACCAgGAGATCGATGGTCaggccctgctgctgctgaatcTGCCCACAGTGCAGGAGTGTATGGACCTAAAACTGGGTCCCGCCATTAAACTGTGCCACCATATCGAAAGGGTCAAACTGGCATTTTACCAGCAGTTTGCCAGCTGAGGGTGATCTTACTCCTGAAGGAAGGAGAGGAGAGTGGGGGGAGGGGGGCATCAGAGCTTTCCTTTTGCTATTCCTTTCAGcttggttagtgtgtgtgtgtgatggcaATATGCTACTGATGGGgaattgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgagagagagagtttgtgtgtgtgtgtgtttaatgctcTCAGATCAGACTGAAACTTGTTGTACAGTGTAGATCAAATTCATGGAGGTTCTTCGTTGGAAGATCTTCTGGTTTAATGTTGGGGTTTAAACTCAGCCATAGAAAGTCATAGTCCCATCTGTTTTTCATAAAACTCAGCCAAGCTTCTCATTTCTTGAAACCTTTAATAATcgtacactttttaaaatgaaggtGCTACAAAAGGTTATTTGAGTGATACCATTTAGATAACCATTTTTgtctccattaaaaaaaaaataaataaattggcaTATTTTTGGCATTGGCATAtatttttgatagtctggaaattaaatgtattttgcatTGATGCAAATGATACAAATCCATTTCAAACCGAATCCAAATGTAGTTTGGATCCAGTTTGccaaaaatcctttttttatgtggtttctgtCTGTTCAGACTATGAAAAATCAATCTCAATACAATCTACATGTTTGAGCTGGTGGTCTGAACCTGGAAATTAACAGGTAAGTAAAACCGGGTGTGCTTGAGTTGAATCCGGACCCCCAGGACTAGATTTTCCCCACCCCTGTTCTGTGGTATCGctcaaaaaaatcttttatagcacctttaattgtttttaaagagTGTAGAGCGGACGACAATGCAAGAATCTTAAGCACAAAGACCAATTGCCCATGTACTGTAAGTGGTATGCAAAAGTGTACATAGTGGAGTTTGTGTGTACATACTGTAAATAGCAGATATTCCTTTTAGAGGGACGAAACTGTCCCTGTTTCTGTTTGGTTTTCTACAGAGTTTGAGGATTACACTGTAAGTAAACGAGAACATTATTTTTCAGGCATCTTCTGCCTGGTGTTTGGTATTGCTGTGGGATTTTGTATAGATGCTAATTACACTGTCCCTGCTGTTTGACGCTCAAACGATCAAACAGAGACGTGttgctgaaaaaaattaaaataaatctaatgtaatataatggaTAATAACATAACAGAATTGAATTGTGATTGTTGTTGTGGTTAGGATTCAAGCACATGAAGGTTCCAGGTTATTGTAGTCCATTCTGATGGTCCAGATTCCAGGAACTGCTcaaatttatatacagtacagtaaaatatGTTTGTCTAAGATTCATCATAAGTGGACCCCTTATATAAACTGAATTTTGATTGCtttcaagagaaaaaaaatccatacttTAATTGCGCATCCATTTCCATCATTCTTTCAGAAATAAGCATTTGTGCTGAAATGTGAAAGGTGTTTTTGTTGGCATATTCTATGTCTTCTGGCCatgttatatttttgtttctttcctttttcctcCCATATTTTGAGAGTTTGGTCAAAGAATGTTGGAATTATTGTTAATTTGAcctttaaatgtatatgtttgtgatgtggtatttaaatgaaataaactaaaccaGATCTAATGCCTTGTCTCTTTCAGGAgtgtaaataaaatcacagttaaaTCCAG

Function

symbol description
sfmbt1 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SFMBT1 (Scm like with four mbt domains 1).

NR:

description
PREDICTED: scm-like with four MBT domains protein 1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682786.1 True 4681 mRNA 0.48 21 31195822 31230827
XM_022682787.1 False 4680 mRNA 0.48 21 31195822 31230829

Neighbor

gene id symbol gene type direction distance location
gnl3 NA coding downstream 339273 30847297 ~ 30856549 (-)
LOC103040946 LOC108435972,LOC107714490,LOC107566450,LOC108254900 coding downstream 393314 30729235 ~ 30802508 (-)
LOC103043315 NA coding downstream 475577 30718976 ~ 30720245 (-)
ptprg ptprg,ptprga,LOC107752167,LOC106583020 coding downstream 1436197 29302534 ~ 29759625 (-)
cse1l cse1l,LOC107750990,LOC107699361 coding downstream 1904219 29280150 ~ 29291603 (-)
LOC103036366 prkcd,prkcdb,LOC108435819,LOC107696837,LOC107728641,LOC107656045,LOC107600299 coding upstream 7642 31238471 ~ 31287104 (-)
LOC103035852 LOC108435806 coding upstream 74738 31305567 ~ 31370546 (-)
fezf2 fezf2,fezf1,LOC108247338,LOC106530279 coding upstream 200062 31430891 ~ 31435487 (-)
LOC107197084 NA coding upstream 509042 31739871 ~ 31747170 (-)
thoc7 thoc7,LOC107739288 coding upstream 547528 31778357 ~ 31785020 (-)
G193964 NA non-coding downstream 984 31194164 ~ 31194838 (-)
G193959 itih3,LOC108435863,LOC105912272,LOC101062864,LOC101070262 non-coding downstream 26939 31137974 ~ 31168883 (-)
G193962 NA non-coding downstream 44580 31148645 ~ 31151242 (-)
G193961 itih3a,itih3,LOC108435863,LOC108435869 non-coding downstream 49885 31144331 ~ 31145937 (-)
G193891 NA non-coding downstream 176596 31018747 ~ 31019226 (-)
G193968 NA non-coding upstream 70651 31301480 ~ 31304310 (-)
G193978 NA non-coding upstream 181090 31411919 ~ 31414467 (-)
G193980 NA non-coding upstream 186920 31417749 ~ 31418526 (-)
G194034 NA non-coding upstream 265173 31496002 ~ 31497236 (-)
G194038 NA non-coding upstream 291913 31522742 ~ 31523803 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other downstream 1773 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other downstream 20944 31174807 ~ 31174878 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other downstream 364865 30809794 ~ 30830957 (-)
G193737 NA other downstream 1015696 30165761 ~ 30180126 (-)
G193541 NA other downstream 2597184 28597555 ~ 28598638 (-)
cadps cadps,LOC107549847 other upstream 219974 31450803 ~ 31654210 (-)

Expression


Co-expression Network