psmd6 (psmd6,LOC107656032,LOC107696848)


Basic Information

Item Value
gene id psmd6
gene name psmd6,LOC107656032,LOC107696848
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 31841108 ~ 31844991 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682807.1
AAGTTTGATTTTGTGCTTTTCAGATATGGCACCGTACTACGAGGCCTTGTGCAAGGAGCTGAAGTGGCCAGTGGACTCAGACCTTCTGGGTAAGATGAAGAAGGCCAACGAGGACGAGCTGAAGCGTCTGGATGATGTCTTGGAGGATGCAGAGAAGAACCTTGGAGAGAGCGAGATCCGGGATGCCATGATGGCCAAAGCTGAATATCTGATTAGAATCGGGGACAAGGAAGGAGCTTTGACTGCTTTCAGAAAAACTTACGACAAAACCGTGGCTCTGGGCCATCGCTTAGACATTGTGTTCTATCTGCTGAGGATTGGTCTGTTTTACATGGATAACGACCTCATCACCCGAAACACTGAGAAAGCCAAGAGTCTGATTGAGGAGGGTGGAGACTGGGACCGGAGGAATCGTCTGAAGGTGTATCAGGGTCTCTACTGCGTGGCCATCAGGGACTTTAAACAGGCGGCCGAACTGTTCCTGGACACCGTGTCCACCTTCACCTCTTACGAACTCATGGACTACAAAACCTTCGTCACGTATACGGTTTATGTGTGTATGATCGCTCTGAAGAGGCCTGACCTCAGAGAAAAGGTAATAAAAGGTGCAGAAATTCTGGAGGTGTTGCACAGTCTGCCTGATGTGCGTCAGtacctgttttctctctacgaGTGCCGTTACTCTATCTTCTTCCAGTCTTTAGCTCGTGTGGAGCAGGACATGAAGCGGGACTGGCTGTTCGCTCCACACTACCGTTACTATGTGCGCGAGATGCGGATTCTAGCCTACAGTCAGCTGCTGGAGTCCTATCGCTCTCTTACACTGGGCTACATGGCGGAGGCCTTTGGAGTCAGCACAGAATTCATTGACCAGGAGCTCTCACGATTCATAGCGGCAGGTCGTTTGCACTGCAAGATTGACAAAGTGAACGAAATCGTCGAAACCAACAGACCCGACAGTAAGAACTGGCAGTATCAGGAAACCATAAAGAAGGGTGATCTCCTGCTGAACAGAGTGCAGAAGCTCTCCAGGGTCATAAACATGTAATCAAATACATCAGAACCGTGGGCTGTTTTTGTTTGAAAGGTTGAGATGTTGACACGTTTTCCAACTTCCAATATTATTGTGGGGcttgacatttttttgtttatgtacagtatataataaaatcTTTTCAAAGAA

Function

symbol description
psmd6 Predicted to enable enzyme regulator activity. Acts upstream of or within lens fiber cell differentiation and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of proteasome regulatory particle. Is expressed in ciliary marginal zone; head; and lens epithelium. Orthologous to human PSMD6 (proteasome 26S subunit, non-ATPase 6).

NR:

description
26S proteasome non-ATPase regulatory subunit 6

GO:

id name namespace
GO:0070306 lens fiber cell differentiation biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0000502 proteasome complex cellular_component

KEGG:

id description
K03037 PSMD6, RPN7; 26S proteasome regulatory subunit N7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682807.1 True 1183 mRNA 0.48 7 31841108 31844991

Neighbor

gene id symbol gene type direction distance location
thoc7 thoc7,LOC107739288 coding downstream 56088 31778357 ~ 31785020 (-)
LOC107197084 NA coding downstream 93938 31739871 ~ 31747170 (-)
fezf2 fezf2,fezf1,LOC108247338,LOC106530279 coding downstream 405621 31430891 ~ 31435487 (-)
LOC103035852 LOC108435806 coding downstream 470562 31305567 ~ 31370546 (-)
LOC103036366 prkcd,prkcdb,LOC108435819,LOC107696837,LOC107728641,LOC107656045,LOC107600299 coding downstream 554004 31238471 ~ 31287104 (-)
LOC111195428 kdm1b coding upstream 59244 31904235 ~ 31907805 (-)
prickle2 prickle2,LOC107590162,LOC107728631,LOC107656034,LOC107739290,LOC107551119,LOC107696846 coding upstream 84735 31929726 ~ 32080712 (-)
adamts9 adamts9 coding upstream 254475 32099466 ~ 32196761 (-)
magi1 magi1 coding upstream 434811 32279802 ~ 32481485 (-)
G194046 NA non-coding downstream 138856 31597364 ~ 31702252 (-)
G194055 LOC108435731,LOC108255025,LOC107696850,LOC107550476,LOC107739284 non-coding downstream 143338 31696272 ~ 31697770 (-)
G194040 NA non-coding downstream 269820 31546553 ~ 31571288 (-)
G194038 NA non-coding downstream 317305 31522742 ~ 31523803 (-)
G194034 NA non-coding downstream 343872 31496002 ~ 31497236 (-)
LOC111195341 NA non-coding upstream 49511 31894502 ~ 31899990 (-)
G194105 NA non-coding upstream 56817 31901808 ~ 31902072 (-)
G194153 NA non-coding upstream 236024 32081015 ~ 32081371 (-)
G194142 NA non-coding upstream 236517 32081508 ~ 32083630 (-)
G194234 NA non-coding upstream 485335 32330326 ~ 32334659 (-)
cadps cadps,LOC107549847 other downstream 186898 31450803 ~ 31654210 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other downstream 647059 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other downstream 666230 31174807 ~ 31174878 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other downstream 1010151 30809794 ~ 30830957 (-)
G193737 NA other downstream 1660982 30165761 ~ 30180126 (-)

Expression


Co-expression Network