LOC111195430 (gria2,LOC108411138)


Basic Information

Item Value
gene id LOC111195430
gene name gria2,LOC108411138
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 10834016 ~ 10859898 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682819.1
ATGGGCAAGACCAAAGAGCTTTCTAAGGATGTCAGGAACAAGATCATAGACCTGCACAAAGCTGGGACGGGGCTACAAATGGGCTACAAAACCATAATGTGTTTGCGTTGGGCAGGACTGACCACCCTGCAGGTTGTGCTGGACACAGCAGCAGAGAGGAAGTGGCAGGTGACGGCAATAAACGTGGGCAACATGAAGGACGAGAGGAAGGATGAAGCCTACCGGTCACTGTTCCAGGACCTCGAGAACAAGAAGGAGAGGAGGGTTATCCTGGACTGCGAGCAGGACAAGGTCAAGGACATCATGGAGCAGatCATAACCATTGGGAGACATGTGAAGGGATATCACTACATTATAGCAAACCTGGGATTTGTGGACGGAGATCTGTCCAAAATCCAGTACGGAGGAGCCAACGTCTCGGGATTCCAGATTGTGGATTTTGAAGACCCTTTGGTGTCCAAGTTCGACCAGCGCTGGGAGGCTCTGGAGGAGAAGGAATACCCTGGAGCCGACAGCAAGATACGGTACACCTCAGCGCTGACGTATGACGCGGTGCAGGTCATGACTGAGGCTTTCCGTTACCTCAACAAGCAGCACATCGACATCTCCCGCAGGGCCAACAACGGCGACTGCCTGGCTAACCCGGCCGTGCCCTGGGCTCAGGGGGTGGAGATCGAACGTGCCCTCAAACAGGTTCGAGTGGAAGGTCTGACTGGTAATATTCAGTTTGATCAGTACGGCAGGAGGGTGAATTATACTGTCAATGTTATGGAGCTGAAAAACAACGGTCCAGTTAAGATTGGTTACTGGAACGAGGTTGATAAGATGGCTGTCACAAAATCTGACCTTTTCCCCAATGATACGATGGGTCTGGAGAACAAGACTGTTATAGTGACTACTATTCTGGAAGCACCGTATGTGATGCTGAAGAAGAACGCTGATCTGTTTATGGATAATGAGAGATACGAGGGATACTGCGTGGATCTGGCGGCCGAAATAGCCAAACACTGCGGTTTCAAATACCGGCTGAAGATTGTGGGGGATGGGAAGTACGGAGCTCGAGACGCTGAGACTAAAATCTGGAACGGAATGGTTGGAGAGCTGGTTTATGGGaAAGCTGATATAGCTGTGGCTCCGTTGACCATCACCTTAGCTGTGATGTATTGA

Function

symbol description
gria2 Enables ionotropic glutamate receptor activity. Involved in ionotropic glutamate receptor signaling pathway. Predicted to be located in several cellular components, including dendritic shaft; perisynaptic space; and synaptic vesicle membrane. Predicted to be integral component of plasma membrane. Predicted to be part of AMPA glutamate receptor complex; asymmetric synapse; and neuronal cell body. Predicted to be active in several cellular components, including Schaffer collateral - CA1 synapse; dendritic spine; and glutamatergic synapse. Predicted to be integral component of postsynaptic density membrane and integral component of presynaptic membrane.

NR:

description
glutamate receptor 2 isoform X4

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005234 extracellularly glutamate-gated ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682819.1 True 1167 mRNA 0.51 10 10834016 10859898

Neighbor

gene id symbol gene type direction distance location
lrrc38 lrrc38,LOC108439497,LOC107685631,LOC108281009,LOC107691331,LOC107555684,LOC107568719 coding downstream 550102 10224975 ~ 10283914 (-)
LOC111195372 LOC108410896,LOC108414677,LOC108416243 coding downstream 731123 10094323 ~ 10102893 (-)
aadacl4 NA coding downstream 812339 9999315 ~ 10021677 (-)
LOC103046340 NA coding downstream 837551 9975733 ~ 9996465 (-)
LOC103033950 NA coding downstream 905595 9902960 ~ 9928421 (-)
lrig1 lrig1,LOC107716980,LOC107557776 coding upstream 220225 11080123 ~ 11155745 (-)
suclg2 suclg2,LOC107729402,LOC107753779,LOC107699794 coding upstream 512359 11372257 ~ 11534415 (-)
fam19a4 fam19a4,fam19a4b,LOC107655986,LOC107600333,LOC107729393,LOC107696804,LOC107558879 coding upstream 1197634 12057532 ~ 12115859 (-)
tmf1 tmf1 coding upstream 1322221 12182119 ~ 12207582 (-)
hmces hmces coding upstream 1370518 12230416 ~ 12236146 (-)
G188838 NA non-coding downstream 134136 10699614 ~ 10699880 (-)
G188649 NA non-coding downstream 500724 10333047 ~ 10333292 (-)
G188644 NA non-coding downstream 509018 10324521 ~ 10324998 (-)
G188640 NA non-coding downstream 510333 10323482 ~ 10323683 (-)
G188633 NA non-coding downstream 518444 10315341 ~ 10315572 (-)
G188900 NA non-coding upstream 133197 10993095 ~ 10993340 (-)
G188936 NA non-coding upstream 216680 11076578 ~ 11076888 (-)
G188930 NA non-coding upstream 217352 11077250 ~ 11078201 (-)
G188929 NA non-coding upstream 218559 11078457 ~ 11078571 (-)
G188939 NA non-coding upstream 296002 11155900 ~ 11156311 (-)
LOC111195437 NA other downstream 877699 9951084 ~ 9956317 (-)
ghrh ghrh,LOC103034597,LOC108438619 other downstream 3414210 7409122 ~ 7419806 (-)
G187946 mybl2,mybl2b other downstream 3442990 7388397 ~ 7391026 (-)
pdrg1 pdrg1 other downstream 3640764 7188616 ~ 7193252 (-)
LOC111195363 snrpe other downstream 3851176 6977651 ~ 6982840 (-)
G188898 NA other upstream 130919 10990817 ~ 10991394 (-)
G189055 NA other upstream 1184015 12043913 ~ 12044293 (-)
eogt eogt,LOC107729408 other upstream 1300644 12160542 ~ 12178610 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other upstream 1438151 12298049 ~ 12395532 (-)
LOC111195455 NA other upstream 1752713 12612611 ~ 12714032 (-)

Expression


Co-expression Network