LOC111195440


Basic Information

Item Value
gene id LOC111195440
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12770735 ~ 12785185 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682830.1
ATGAGCTCTGTTACACCCACTAaggactccaactcccagcatgcaccaacACCAGATCTTCCGGACTTTAGAAAAGTGGGAACTACTAACATCAAAGTTCAAATTGAACACAGAATATCTTTCTTTCAGGAGAGGAAGCTCTGCGCTCACCCATTCCTGGAGATCTACAGGGGTCAGCTGATCCACTACATGAGTCCACTGGCCAAACAGGGGGACTTCTATGTGCCTGAGGTCAGAAAGGCTCCAAAGAGAGCGCAGGAAGGGGAGGAGTCAGAGGAAGATGGGAGGACTGACATCACAGGTGCCGACTCCTACAGCGAGTGCAGCTCCATGAGCCACCTGCTGCCATCGGACAGCCGTGACCCGTCCCCAGTACCATCCAACACCTCGTCCATCAGGTACCGAGACGGCCGGCGGGATCGGGACTCCCCCGAGCTCAGCGGGTCAGAAATGGACAGTGGGCGGAGCCACAGAAGCTCCTCCGCTTCATCCTTTGAAGAACTGGACCTGGAGACAGACCTGACAACCCCAGAGAACAGTCTGACGCTCAGCAACCCAGCGGAGGTCAAAATCACAACTCAGGAACAAGTGATGGTGGTGGGGGAGGAGTGAGGTAGATGGAACGGGTTGATGGTATATTATATCAAATGATCAATAAGAGATATTGCAGTGTATGCAGTATATGAAACATGGAGATGAACAAAAGAAAGGAGGCAGACAGCAGTAGAAAGATGGCTGGGAGAGTCTTTTATAAACTAGTTTTGGTGTAGACGtgttaactataaataatatttgGGGAGATTTAGGGAGATTTCCACAGGTTTAAATTGATGCAAAAGATTTTGTGGTTGAGTATTACAGTGTTTGTTAATGGTCAGAATATCTCAGAAGGGCTTTTCTTATTTTCACCAAATATTCAGATAAGATTGTGCTTCTTCTTTAAATGGAAATTCCACATATCTTACGACAGTTCTTCGTAATTAAATGACAAGAttgtaatgataaaaaaaaaggtaattcaGTATGACTCGGTGTAAAAGCTCCGTTCTAGAATCCAGTCATGGCTACAACACAAATATAGccacacctgtatatgttgtgaggtgatatcttgtaagtgaggcctgatagtgggtgctggATGTATAGGACATTCCATTTTTGAAGGcattttaacattcctcaagAATCTgtcatctggctagaattgtccacgGGTTCAGACAAGCAAGTCAAGCAGAAATCGCATCCACATTAAATGCAGtagaccccacacacacatatatcccACATATtggggatatatatataatatatatatatatatatatatatatacacatatgatattgtgatatttttgtaataaggtcatattttaaaaatacatgcaGGGTATTGTAAGAATCTTAAAGTAGTCCCCAATGAAAACTTTATTGGAATGAAATGCAAAACAAGTAGATTTACTCTTGGGATTGggtaattacagtatttttcgcataaatgcattttaagagacactgtaAGGAACTTAATtgaagtaaagctaagctaagtaaacaaaactgtaataaaacaagaCTTTCTTTTAGAGTCAAaagagagctggatgttaatctacacagatttctctcctgaaatttctccagcactaaggctggagcattaccATTAGAATTAGCGATTAACCGCTAGcgtaaggagcactggatttaatttaatttttgggaaaattaaagaattttaagtgcgccttatagtgctaaaaatacagtaaaagaaTGGCTATGTTTGTGTTGTATCCTTTTCCTATGTCACCACTGTAGAGAAATCTGCATTGGTAAGTTTCTTTACAATGAATTTACAGTGGAATTTCCATTTCAAGTAAAGTTACACTGGAAAAATCTAATTTCCAGTAGCAGAGTCAATTCGCCAAGATGTGTTTAGTGTCTGTTGGTTACTTCTTTATTTTTGCACTGATAGTCTAAAATCAAATagtttaatataatgtatttattttaatatagagatgtttttttccacctaaaataaaagatatatgatatattattttCAGACTGCCAGTCCTAATCCAATTATCCAGTTATACTTATCTAGATTGTATTCAGATTGATAGTCTGATTTTGATAGACTGGATAGccagaaaccacttaaaaacatGACCATTGCAAATTAGTTCCAATCTACTTtggctatgttcagactgtCAGCATGAATcgcatttatacatattttgtattctagattgtatccaggtTGGTTTTCGATCATCTGGACAGACAGAAACCACATTAAATCTGAATTATACAAATCTGAGGCAAACCATATGTAGATATGGTttgaaatatgatcagaacaATTAGAtggtaccacttaaaaataagactac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682830.1 True 2410 mRNA 0.39 3 12770735 12785185

Neighbor

gene id symbol gene type direction distance location
LOC103030591 LOC108435310,LOC108281021,LOC107715788,LOC107659540,LOC107575639 coding downstream 14552 12714488 ~ 12756183 (-)
gpr61 gpr61,LOC108434964 coding downstream 83617 12673366 ~ 12687118 (-)
LOC103029205 LOC103029205,LOC108435351,LOC107659543,LOC107715787 coding downstream 104516 12662572 ~ 12666219 (-)
sypl2 NA coding downstream 158718 12594526 ~ 12612017 (-)
atxn7l2 atxn7l2 coding downstream 178642 12574219 ~ 12592093 (-)
ippk ippk,LOC107755999,LOC107658385 coding upstream 35690 12820875 ~ 12854393 (-)
LOC103025083 LOC108431510,LOC107586924,LOC107756006,LOC107593103,LOC107704447,LOC105893506 coding upstream 95637 12880822 ~ 12884782 (-)
shisa5 NA coding upstream 120145 12905330 ~ 12922980 (-)
nuf2 nuf2 coding upstream 140871 12926056 ~ 12940460 (-)
LOC103034476 zgc:77375,LOC108431553,LOC108254961,LOC107700631,LOC107758152 coding upstream 167325 12952510 ~ 12972311 (-)
G189352 NA non-coding downstream 2024 12768010 ~ 12768711 (-)
G189349 NA non-coding downstream 59722 12709673 ~ 12711013 (-)
G189348 rrp9,LOC107659541 non-coding downstream 66023 12704268 ~ 12704712 (-)
G189345 sort1 non-coding downstream 111971 12653060 ~ 12658764 (-)
G189344 sort1 non-coding downstream 119645 12649311 ~ 12651090 (-)
G189376 NA non-coding upstream 94760 12879945 ~ 12880344 (-)
G189380 NA non-coding upstream 105649 12890834 ~ 12891269 (-)
G189381 NA non-coding upstream 109678 12894863 ~ 12896608 (-)
G189385 NA non-coding upstream 117752 12902937 ~ 12903160 (-)
G189402 NA non-coding upstream 244985 13030170 ~ 13032240 (-)
LOC111195455 NA other downstream 56703 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 151169 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 375203 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 592125 12160542 ~ 12178610 (-)
G189055 NA other downstream 726442 12043913 ~ 12044293 (-)
tsen2 NA other upstream 277614 13062799 ~ 13076742 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 2533458 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 2624022 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 3560516 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 3784438 16569623 ~ 16599317 (-)

Expression


Co-expression Network