LOC111195441 (LOC106570611,LOC106595375,LOC106565963)


Basic Information

Item Value
gene id LOC111195441
gene name LOC106570611,LOC106595375,LOC106565963
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 13459735 ~ 13465405 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682831.1
gtcaaaacactaaaataaccaAACATCTTCATCCACATTCAAAACAACAATCAACTAGTCTCCATCCGGACCTGCAGGGGGCAGATAAGCTTTGAAACAACCACACCACTGCACTCTGATGGACTTCCTGTCAGGTCTGAGGGATTTCCTGTAAGGCGGCCATCTTTACCCTCAGATCAACACATGCTGCAGGGGACAAAGAAGCAAATGTTTGTTTGGAGCAAAAGCTTGGAAAAagacaaactaaagaaaacaagaaaatcctTCAGTTCACCGGTCAAACGCTACTGgtTATCAACCTAACTATCTGCCTGGCTGATACCTTTCATCAATAAAATCAAACCAATCAAAGACGCCTTCGAGTTGTTCCTTGCGTGACTGGGCTCTTTCAAGTTGGAGCATAACTGAGGGAAAATCAAAGCAAAACACCAGAAACTTGACAGTTGATAACCACCGTGGCAACAGAGACGGAGGATCAACGGCCTCCAGTCAACTTTGTCTACGCAAAGGGCAACTTCAAGTATGGCGGAAGAAGCCACTGGAAAAACCATCAAACAGCTGAAGATGGAGAGGACTTCAGCAAAGATGGCCTTCACAAAACAGGCCAATTACCTCACAAGAGGAATTGAACACCTGACGAAATCAGAGATACAGAAGGAATACAGGGAACTCTGCTCACTCTCCAGGAAAGTCAACGACGCGAACGACGAGTATGAGCTTGGTCTACTAGCGGAGgttgaagaagaggaagaggaggtgaAGCTGAATCCCAAAGAACAAGCAGACCTTTCAAAGACCACAGGAGactgtaaaaatagactggAAGAAGTCAGAACAAGTGTGCAATCCAGTCTCTGGTCAAGGTACGCTGAGGGGGAGTTGACCTTCGCCATTGAGGAGGCAGAGTCGGCCTGCGAACAAGCTCGTGGAACCCCTGTGGCCCTAGTCAACAAAAATGGATATGAGCACCAGGTGGAAAGTGCAAAGCAACTTGTCGCAGATGCAATGGCTGTATTCAAGCAGTGGCAAGAGTGGATACCCAACAAAGAAAAAGATGACTGGGATGGCAGGACAAAGGGTTTAAGAAAGATGAAAAATAACCTTGAGGCAAAAAAGGCTGAATACCTGATCTTGCAGAGAACTGCAGAGGAGGAAAGGCGTGGAACAACTCTTCAGACTCAGTCAGCACAGCAGCCAGTCCAGCAGTCTATCCTGAAAATAAAACCCACCAGCCTACCCAGATTCCATGGCTCAAAAAGAGAGTTCTATCAATGGAAAAAGGACTGGGAGAGTCTGCAGCGGCAAGGTGAACCAACCGGCTCGGCGGAGGCAAAGAAGATGCAGCTCCTTGACAGTGTTGACGACAAAATCCGCAGAGACCTACGGCTCCCCACCTACAAAACTGCTGAGGATATGTTCAAGGTCCTGGAAAACCGATTCGGGAATAAAACCACCATCGCCCTGGAGATCATCGAAGACCTGGAGAGAATCCCACCTCTGAAATCCTACCAGCCCAGGAAGATGATCGAACTGATCCAGTCTGTTGAAAAGGCCTTGAACGACCTCACAGAGCTCGGAAACACCGGAGCCATTAAAAATCCTCTTGTAGTCAAAACGATTGAGAGCAAACTGCCTAACACGATGAAGAGGGACTGGCTAGTCTTCATGGTGAACCCAACAAATGCAGTCACTCCAGAAAACCATTTCGACAGCCTCCTGACCTACCTGAAAACTCAGGAGGAAGTTTTagagaggcttgagcagctcgGACTAGGTGAGAAGCCAGACAAGAGGCTGTCTGACACCAAGAGATATGCCTTGACTAGGTCCACAAGCAAAGGGGGATGCGTCGTCTGTGGTGATGAGCGGCACACAGAAAAGCTCTTCTTCTGCAGGAAGTTTAAAGAACTGAAGCTGAGAGACAAACTGAGTGCTGTGGAGAGACTGGGAGCCTGCACAAAATGTCTGGAGTGTCATGAAGAAGACGATACAACCTGCAAAGACACTTACCTGTGTAGAAAGCCGGGCTGTAGGAGAGGCCATCACTTCTTCCTGTGCCAGAAAGGAGACCCTAAAAGGGTAGAGACGGAGACATCAAAGCCAAACACGAGGAGGCATCAACTGACAGAAGAGCAACAACAATTCGTGTCAGAACTGTCCCCTGAAATGGCAGAAAAGTTCAAGAAAGCCTTTACAAATGTCTCTGCAAGATCTCACTACACCAACGAACCTGCAGGCATGAAAGTAAGTGTAGTTCAAGAACTCCCAGTGATCCTCATGCTCCTTGAAGTCACCACCAATGCAGGTCAGAAGATCGGTACTCTAATCGACTTGGCATCCGACACAAATTACATTACCCACCGTGCAGCCAGGAGACTCGATCTGAAGAGTGAAAAAATCACATTAGTCATCCAAGGGGTTGGAGGAATGGCCCTAAAAGTAAAGACAAGGAGATACCACCTCAGAGTGAGAGTGAAGACCCCCAGAGGAAGCGAACGAGCCCATGAGCTCCTCTGCTATGGCTTGAAAGACATAGCCAAGGTACAAAACCCAGTCACACCCCAACAACTGGAAAGGTTCTTTCCAAATGCCAGCTTGGATGACCTTCACAGACCGGAGCAAATAGAACTGCTCATCAGCCATCGAGAGGGACGACTTGCACCACAGAGGGTGAAGGTGGTCGGTGACCTCGTGCTCTGGGATGGCCCACTAGGAAAGACAGTCGGCGGAACCCACCCAGACCTCTTTGAAAAGGTGGACTTGGCAGCGCACACATCAAAAACCCACTTCGCACGATCCATGAGGGCCACAGCTGTAAAGTACCAAGAACTCTGTGACACGCATGGAATCAAAGCTGAAACCAGAACCACTGTAACCAACAAAGAATTCCTCAACTGGTGGAAATGGGACAGTATTGGAGCAGCCTGTGAACCGAAGTGTGGAGGATGCAGATGCGGCAACTGCCAACCAGGAGGCAAGGAAATGACACTGAGTGAAGAAAAAGAGCTCGAAATCATCAGGACAGGCCTCACCTACATCACCGCTGACAATCACAGCAGTGAACCACACTGGGACACAAAGTACCCATGGATTGAAGATCCAAATTCCCTGCCCAACAACAGAAGTGGAGTGGAAGCCACTTTTCGGAGGATAGAGGAACAACTCAAAAAGGAACCAGAGTGGAAAGTAGTATATGCAGCTCAAGTCCACGAAATGGTGGAGAGAGGAGCAGCAAGGAAACTCACCAAAGAGACTATGGCCAACTGGACAGGACCAGTATGGTACGTCAGCCACTTGGTGGCGCCAAACCCACACTCTGTCACAACACCCATACGCCTGGTCTGGAACAGCAGCCAGAAGTTCAAGGGACTCAGCATGAACGATCTTCTGCTAAAAGGACCTGACGTCCTCAATCCGGTTCGAGCAGTGCTACTCAGGTTCAGAAGAGGTGTGCATGCAGCACTCGGTGACATCAAGAAGATGTATAATTCAGTGTGGTTGGAAGACTTGGAAATGCatcttcacagatttctctgGAGAGACACCGAAGACAGTGAACTGGAAGAGTATGCCATCACCCGAGTCAACATTGGTGACCGACCAGCAGGGTGCATCGCACAGCTGGCCATGAGAGAGACTGCAAAGTTACCCATGTTTGCTCACCTGGAGGAGGAGCGCAGGATCCTGGAGGAAGACTTTTATGTTGATGATGTACTGACTTCTCACAATGACTTGGAAAAGCTGGACAAAATCACCAGAGGAGTTGATGAAATCCTGAAAGCAGGTGGATTCCACCTGAAACCCTGGGTCCGGTCAGGTCAGAGTGGGAGGGACACACTCAGACCAGCAAACAAAATCCTTATTCTCCCAAATCAAAGAAGAGGAGAAGATGACAAAGCCCTGGGAAATGGACCAGACTTCCTGAAGCTACCTGTGGAAGAGTGGCCGAAAAAGTCTGCCAAAGAAGTTGCAGCCCACGCCAGGGAAGGGATAAAGAAGCTTCAAAGGAAGTCCTTCTCAGCAGCACTGACCAGAGCACAGCTCAAGAAAACACACGATGTTCCGTCTGGTGGTACAAGCAGCCCAGTGAAAGTCACAGGCAGAAGAGACACCGTTGCTCAGCAAGGCACTGCAGATGGAAAAGAATCCAAAACTCCACTCCGAAGACCACCAGCTGGTTCTGCAGTGAAAGAACTGATCAATGTCAGAAAATTCAGCAGCCTAACCAAGGTCATCAGAGTTGTTGCCTGGGTGTGGAGAGCTGCAGTTAGATGGAAAAAATTGCTGGACAAAACCCAATTCACAAGTAAGCCAAAGTGGGAGGGGCTTTCGCCAGAAGAGCTTAAGTCCAGAGCCAAACAAGCTGTACTCACCGTCAGTGAATGTGAAGATGCACAGAGAGACCTCTTCCTCGCAGCACAAGAGGGTGCATCCTTCCAAGACACTACCCTCAACCGACTGGCTGTGTACAAAGATGCAGAAACTGGACTCTTGGTCTGCGGAGGAAGATTTCAGATCTTCAATGATGAAAAAACTACGGTACCAATCTTACCTTGTGATGCATGGATATCCTCTCTTCTGGCACAAGAAGCTCACAATGCAAACCACGAAGAAATAGCAGGTACACTTCTGCGAATGAGAAAGAAAGCATGGGTCATAAGAGGCCGGAAACTGGTTCAGATGACTGTGGACAGCTGTGTGACATGCAGAAAGGCTAGAGCTAAAAAGTGCAGACAAATCATGAGTGACCTCCCATCCGAACGGATAACACCAGCCAGACCTTTCGAGTTCACAACAGTGGATCTATTTGGACCTTATGAAGTGAAGGATGAAGTTAAGAAGAAATCAAGGCTCAAGgTGCCAGACCTGCCCTCAATCAGCTGTACACCTTTCTGGACCAGCTACAATCGTCAGAGGTTGAAAATGAAGCCTCCAAGCATGGGACAGAATGGAGCTGGAAACTTCACCCCGCTGATTCCCCTCACAGAAATGGAGCTGCGGAGGCTGCTGTGCGAACAGTGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106570611

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682831.1 True 5022 mRNA 0.49 4 13459735 13465405

Neighbor

gene id symbol gene type direction distance location
LOC103033524 mmp19,LOC103033524,LOC108431507,LOC107737372,LOC107683650 coding downstream 63840 13384925 ~ 13395895 (-)
LOC103031721 syn2,syn2b,LOC107758022 coding downstream 177262 13148196 ~ 13282473 (-)
pparg pparg coding downstream 327639 13085029 ~ 13132096 (-)
mkrn2 mkrn2 coding downstream 412189 13033576 ~ 13047546 (-)
LOC103027392 cnbp,cnbpb,LOC106583855,LOC107742030,LOC108431552,LOC106566283,LOC108254964,LOC107742027,LOC107675970 coding downstream 461125 12994479 ~ 12998610 (-)
gdf11 gdf11,LOC108431504,LOC107385665,LOC101480554,LOC103359380 coding upstream 28171 13493576 ~ 13533622 (-)
LOC103026383 NA coding upstream 91617 13557022 ~ 13572611 (-)
LOC111195442 NA coding upstream 786059 14251464 ~ 14255472 (-)
vgll4 vgll4,LOC107697562,LOC107750033 coding upstream 1083741 14549146 ~ 14609624 (-)
tamm41 tamm41 coding upstream 1145546 14610951 ~ 14621412 (-)
G189494 cdk2,LOC107570445,LOC107683630,LOC107562245 non-coding downstream 3308 13452154 ~ 13456427 (-)
G189490 NA non-coding downstream 11210 13448241 ~ 13448525 (-)
G189455 timeless non-coding downstream 124825 13333460 ~ 13334910 (-)
G189448 NA non-coding downstream 143790 13315709 ~ 13315945 (-)
G189422 NA non-coding downstream 215751 13243581 ~ 13243984 (-)
G189509 sarnp non-coding upstream 7220 13472625 ~ 13485558 (-)
G189522 NA non-coding upstream 81125 13546530 ~ 13546899 (-)
G189600 NA non-coding upstream 475781 13941186 ~ 13943399 (-)
G189623 NA non-coding upstream 508250 13973655 ~ 14047697 (-)
G189624 NA non-coding upstream 514511 13979916 ~ 14008260 (-)
tsen2 NA other downstream 382993 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 745703 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 840169 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 1064203 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 1281125 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 1853238 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 1943802 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 2880296 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 3104218 16569623 ~ 16599317 (-)
cass4 NA other upstream 3368445 16833850 ~ 16869461 (-)

Expression


Co-expression Network