fndc11


Basic Information

Item Value
gene id fndc11
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15032273 ~ 15033061 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682833.1
ATGGAAGAGAAAATAAGGCACCTCCTCAACACGAGAGTGACCACAGATCAGATCCGCACTTACTTCAACCAGCAGGAATCTTTCAGTAGGTGCTCCTTCTACATCGAAATCAAAGGCAAGGATTTGGAAACACAAACCACCAGGTCTGTCCCTGTCCAGAACCTCGACCCACAGAGGTTAATGCGGGTGAAATTTGACGCCAAGACCCAAGTGAGAGTGCAACTGGCCTATCAGACAGAGCTCCTCAAAAAGCTCGTCAGGAGCAGGGAAGATATTGCAGTCATTGCTGACAAAATCCATCAAGGATacgttgttggtgaagaagacGACATTGACCGTAAAATGTCAGAACTTGAGGACACTGCTGCTGAGTTTGAAAACTCCCTGTTGCTTGGTTCTGTCCACAACCGTCACAAGCTCATCTTCGAGGCCAACGGGGTTGTAGTAGTTCCGCGGCTCACTTTGGAACTAAAACTCAAGAAGCCAGTGATATTTGAGAGAGGCCTCTGTGTCATGTTATTGAACGTTGCCTACCTACACTGGAAAATTGAGGAGCAGGAGCAGGACGAGCCAGGCGAAGAGTTCCAGATCCAATACAAGGTCCAAGATCCAGAAATCCACGATGCAAGCAACCGGTCGATCAACTGTGGGCTTTACAGAGCAGCAATTATACCAAATTTGGTTCCGGGCAAATTATATGAATTTACCATCAATAGGGTGAACTCCGGCGACCTGGTCTACAGCAAGTGGACTGATACCATCTGGCTTACAACCTCACCTGATTGCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682833.1 True 789 mRNA 0.48 1 15032273 15033061

Neighbor

gene id symbol gene type direction distance location
LOC103047892 LOC108424570 coding downstream 47378 14973578 ~ 14984895 (-)
LOC111195383 LOC108424608 coding downstream 76854 14954137 ~ 14955419 (-)
LOC103040538 si:ch73-190f16.2,nabp2,LOC108424604,LOC107557546,LOC108255000,LOC107572067 coding downstream 175887 14847122 ~ 14856386 (-)
LOC103039903 LOC103039903,LOC108431517,LOC108255002,LOC107697969,LOC107598614,LOC107715030,LOC107671896,LOC102210977 coding downstream 236522 14786322 ~ 14795751 (-)
LOC103039087 NA coding downstream 253932 14767313 ~ 14778341 (-)
LOC103021615 NA coding upstream 8614 15041675 ~ 15054177 (-)
tp53rk tp53rk coding upstream 23108 15056169 ~ 15061088 (-)
LOC103042686 LOC103042686,LOC108424612,LOC108255211,LOC105895941,LOC104930306 coding upstream 40560 15073621 ~ 15087689 (-)
LOC103044311 ube2v1,LOC107572061,LOC105022328,LOC106572481,LOC107683645,LOC103044311,LOC108425074 coding upstream 57164 15090225 ~ 15096142 (-)
LOC103042998 ptk6,LOC108255075,LOC103372356 coding upstream 67414 15100475 ~ 15130469 (-)
G189867 LOC108424607 non-coding downstream 118208 14906176 ~ 14914065 (-)
G189852 NA non-coding downstream 164534 14866421 ~ 14867739 (-)
G189846 NA non-coding downstream 188030 14842576 ~ 14844243 (-)
G189845 ankrd52 non-coding downstream 201967 14825835 ~ 14830306 (-)
G189841 NA non-coding downstream 217242 14812998 ~ 14815031 (-)
G189951 NA non-coding upstream 6920 15039981 ~ 15041242 (-)
G189958 NA non-coding upstream 26895 15059956 ~ 15197059 (-)
G189956 NA non-coding upstream 68667 15101728 ~ 15135426 (-)
G189987 NA non-coding upstream 165365 15198426 ~ 15202766 (-)
G190001 NA non-coding upstream 176556 15209617 ~ 15284715 (-)
tsen2 NA other downstream 1955531 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 2318241 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 2412707 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 2636741 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 2853663 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 285582 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 376146 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 1312640 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 1536562 16569623 ~ 16599317 (-)
cass4 NA other upstream 1800789 16833850 ~ 16869461 (-)

Expression


Co-expression Network