LOC103038073


Basic Information

Item Value
gene id LOC103038073
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 19217715 ~ 19239669 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682846.1
GAGCCTGAGATTGGAGCTTCACCTCTGggagcagctgctgctgctgctgctgttctcagGTGAAGAAGAGTCGTGACGGTGGACACCACGGACTCTTCTCTCATCACTGATCGCGGGTTATCTGTGAGGATTAAAGCGATTAATCCGGATTTAAACACGCTgaagtttttttcttcacttccaTTAATTTCCTGGTGAAGAAGCTCCGCGCGATGTCTCGCGCCCCCGCTGGATTACCGGACTCTGTGGGAACCGGAACCGTGTAGAACTGTTCTGTGTTCAGACTGCGGGGCTGAGAGATCAGATATGGGGTTCTGGGGGTCTGTGCTGCTTCTGCTGGCTGGAGCCGTGGCATCTTTAGCACAACTGGAGAGATACGACCCCAGTAAGATCAGTACCTGCTCTCAGggtcTGATAAGCTGCAGTGTGGTGGATGACTGGTCTATAGTGCAGGAGGAGGACTCTGGACCTGTGGAAATCTCAGATGTGGATGTGAAGCCGGTTCTGTGCTGTAAACAGAACCAGAGATGTGAAGCTTGTCTTCTGATCACCATCCACATCCGCATCCTGAACCAGACTGAAGGTAGTGGAGAAGATTCAGGAGACAGTGAAGATGAGAATGAAGgtgtTATAACAGTGCGCTACTATTCTGGACCCAACCTTCCTCAGTACAGGAGGATCTTCTTCACAGTGACACCGGCTGCCCGCAGGAAACAGGTGGAAGCTCAGctgaaGGTGGTGGAGTGCAGGGACGTGTTCCCGGGCAGTCGTGTGAACGTGACGGTCAGCTCCTTCAATCGCTCGGTCTCGTTCCCCTCGCTGAGTGAAGTCTGTCCTTACGCAGATTTAGAAGAATGTAAAACTCCCAGAGTGATCCCGGTGATTGACAGGTCAGGGGGCGTGGCTGAGCTGAGAGAGGTTGATGAGGATGTGAGTCACCCGGAGAGGCTGCGGATCTGTGTGAGGCGAGGGCTGGTGGGAAAGTGTTGGAAATCTCCACCGATCATTCCGTTACACAGCGTCACCTCCTGCATGTGTTTTCAGgctTGGACTAATGGTTCTCGGACCTGGTCCTGTCcttttactaaaaataaagAGTTCAGAGAGAACGCAGTGAGGAATGCGTCCCTCACCGTCAGTCACAACAAGACCAACGACGGCCGTCCCGTTCTGAGCTGGATCCTGAGCGCCCCCTGCAGCCTGGAGGCTGAAGTGTGGCCGTGCCGGATGGGGGCGGGGCCGGGAAGCGACTGTAAGGAGGTGCCGGGGTTCAGAGTCAAATATACCAAGGATTTGCAATGGTCTGAGAACAACTCCACGCTGTGGATCTCGGGGGAGTTTGTGAACTTCAGCTCCCACAGACACTTCCTGCACTGTGTGAAGTTTAAGGTGGACGGGGTGATATCTGATCCTGTGTGTCAGTATAACACCCGTAGGTGGCGCTGGAGCGCTCCTGTGCTCGTGGCTCTGCTGGTTTTCGGCCTGGTTGGAGTTGGAGTGTGTTTGTTGAGGAGGAGAATCAGAGGCTGCGTTTCAGACTGGGATAAAACCACActctctctctctgcagtagaAGCTGGTGTTGAGGAGGTGCTGCTCCTGCATGCGGGTGGTGCTGATccgggtggtgtgtgtgttctggcgTATCAGTTATCTGATCTGGGTTTGGGGGTGTGTTCTGATCTGAGCAGTCAGAAGGACGTGGGGTCCTGTGGTCCGGGGCCGTGGCTGCACTCTAAACTGGCTCAGCTCCAGAAGCCCGGGGGTAaagtgctgctgatgctgtcTGACCCGGCGCTGGACACGGCCCAGGCCTGCTGGGACAGCTGGACCCGGGAGAGGACGGGACCGGCGGATTACAGGACTCCTCCGTGCTCCTCCGACGTTTTCGGCTATGCCCTCAACTGCATTTTCACCGCCCGTCTGAAGGGCGGCGCTGCTGAGCGCTTCGCTCTGGTGCAGTTTGACTCTCAGAGACTCCTGGACGGAGACAGACTCGTGCCTGAGCTTTTCCGAGGCCTGGATCTCTACAGTCTGCCCTCAGACAGCCGCAGACTGCTAGCAGAACTCTGCCCAGAGCGGACCACCAGGTTTAGCATGCGGCTAAAGAGGCTGCTGTGGCTCAGACAGGCCTCCGGCAGGCTGGATAAGGGGCTGAGGAATTGTGGGAAAGGACTGCGACCACATGCTGATTCAGTCCTTACACAGGAGGAGTCTCTGGAGGAGGAGATGCTCCCTCTGAAGCATTGACGTTACCTCAAATCAGCTAGCGTGGATGAAATTAGCGTACTAGCTAAATAGCAAACATGAGCCGCCAATCTCATACAGTGTGTCTGGATTAGGGATGGGCATTTGAACCTTTTAGCTGTTGATATAtccacaatttacacattttacacttaTAGGGCCCTGTTTTACACTCTGCGCAAAGTGTATCGtagtgctcattgctatcttacaccatacaagcagtctattttcacatctttCACCTGTATGGTTTAATACTTATACTCACTGTTTACAACTTGTAAAATGAAGaatggaagtgaggtgtgttcggGTAAATatttggtgtattgctatcttggcaatggaaaaaaacacaagtgcATTACTGACTTAAAAGAAACTAGataacagtcaatcatcagatgtttattgctatcctGGCAACGCAGTGCATAAACCCAATTTTTATATGTTCCCATAAATGAGCCGTTCGCACATCTTTActgtgtgaatgagcaggtTATTTTCCACTGCTGAGAATTGCAGAAGTGCTGCACTGTCAAATTAGCAATTCGCCAAATTTAACGCCCGCTGCTCtgaaagggaatggcaagtgacactctgattggcttATTTCATGGTACTCCAAAAACACACGATTAATAAAGAGAATCTGTCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682846.1 True 2912 mRNA 0.52 14 19217715 19239669

Neighbor

gene id symbol gene type direction distance location
LOC103035880 LOC103035880 coding downstream 4059 19206055 ~ 19213656 (-)
LOC103035575 NA coding downstream 14385 19199678 ~ 19203330 (-)
rad54l2 rad54l2 coding downstream 270322 18927027 ~ 18947393 (-)
LOC103033109 LOC103033109,LOC108443914 coding downstream 296960 18903417 ~ 18920755 (-)
LOC103032073 NA coding downstream 324184 18872251 ~ 18893531 (-)
LOC103038392 NA coding upstream 19063 19258732 ~ 19280996 (-)
LOC111195448 NA coding upstream 42434 19282103 ~ 19312759 (-)
LOC103037635 NA coding upstream 76149 19315818 ~ 19346307 (-)
LOC103044861 NA coding upstream 118744 19358413 ~ 19390900 (-)
LOC103044542 NA coding upstream 152124 19391793 ~ 19417508 (-)
G191321 NA non-coding downstream 21329 19194927 ~ 19196386 (-)
G191296 NA non-coding downstream 117891 19045406 ~ 19099824 (-)
G191075 LOC108443907,LOC108271865,LOC108444093,LOC108254800,LOC108443910,LOC108440470 non-coding downstream 428830 18775652 ~ 18788885 (-)
G191074 NA non-coding downstream 439544 18748963 ~ 18778171 (-)
G191079 NA non-coding downstream 465689 18732558 ~ 18752026 (-)
G191328 NA non-coding upstream 9535 19249204 ~ 19249453 (-)
G191329 NA non-coding upstream 13207 19252876 ~ 19253089 (-)
G191339 NA non-coding upstream 88297 19327966 ~ 19328622 (-)
G191337 NA non-coding upstream 178562 19418231 ~ 19428960 (-)
G191338 NA non-coding upstream 293277 19532946 ~ 19562551 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 315430 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 418800 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 902378 18311452 ~ 18315337 (-)
mrpl20 mrpl20 other downstream 1004185 18139363 ~ 18213530 (-)
LOC103036492 card19,LOC108443695 other upstream 271652 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 1859678 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 2190347 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 2271255 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 2607300 21846969 ~ 21851642 (-)

Expression


Co-expression Network