LOC111195448


Basic Information

Item Value
gene id LOC111195448
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 19282103 ~ 19312759 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682847.1
GTGTGTTCAGACTTCAGTCCAGCGTGGGTCATCATGAGTGGAGCCACGGTCAGCGCCGCTCTACTGGGGCtcttatttgtgtgttttaccACGGCCCCGCCCGTACAGGAAGATGTTGAAATCAGCAGCTTCCACATCAACTCCACCGTCACCAGCCGCTACGCCATCACGGTCATCACCAGCCGGGTAAAAAATCGACACACGGATTCCAAGGAAATCCATTTTGAGGTCAAGATTCCCAAGAATGCCTTCATCAGCAAATTCAGAATGACTATAGAGGGGAAGACGTATGATGGAGTGGTGAAGGAGAAGGAAGCAGCTCAGCAGCAGTACAGTGAAGCAGTCGCTCGAGGAGAAAGTGCCGGAGTGGTCAGttcAGTGGGTCGGACTCTGGAGGAGTTTAAAACCTCAGTGACGGTCGCGGCTCTCAGTAAAGTCACCTTTGAACTCACCTATGAGGAGCTGCTGCAGCGACGCCACGGAAAATACGACCTACTGATCCACACTCAGCCCATGCAGCCTGTAGCAGATTTTAAGATTGACGTCTCTATTAAAGAGAATCCAGGCATTTCCTTCCTGGAGGTGAAAGGAGATCTGAACAGTGGTGAACTGACCAATGCTGTGACCACAGCCCGATCTGGTAAAGAGGCATGGATACACTTCTACCCCACCAGTGATCAGCAGACCACGTGTTCCAGCTGTACAGAAAATGGACTGAATGGAGATTTAATCATAACGTATGATGTGGAGAGAACAAACCCCAACGGAGACATACAGATAATGGATAATTATTTCGTGCACTGCTTTGCACCCTCTAATTTGATTCGAACTCCGAAAAATGTGATCTTCATCATCGACCGGAGCGGCTCCATGAGCGGCAGGAAAATCCAGCAGACCCGGAGTGCATTGGATCATATTTTGGGAGACCTCGATAGTGAGGACCACTTTGGGCTGATCCTGTTTGACAGTTATGTCGACGTCTGGAAACGCGAGCTGATCCAGGCCACCAGCAGCAACGTGAATTTAGCGAAGCAGTTTGTGAAAACCATTCAGGATAGAGGAGCCACTAACATCAATTCTGCAGTTCTGATGGGGGTGGAGATGCTCAACAAACACCGGCGAGAAGGCTCCGCCTCCATCCTCATTCTGTTGACTGATGGAGACCCGAATGAAGGTGAAAGCAATCCAGACAGGATTCGAGTCAGTGTGAAAGAGGCCATCGGGAAGAAGATGGCTCTGTACTGTCTGGGCTTTGGGTTTGATGTTAATTTTGATTTTCTGGAGAAGATGGCTCTGGAGAACAATGGATTCGCTCGCAGGATCTACGACGACTCTGACGCTTCTGACCAACTACAGGGTTTCTACGATGAGGTCGCCACCCTTCTCTTATCCGACCTTGAGCTCCTCTATGAGGGAGCGTCGAACCTCACCGAGACTGCTTACAGTATGTACTACAACGGCTCTGAGATCATAGTCGCCGGAGAAATCACAAACAACAGCCTGGAGAGTTTCAAAGTGGAGGTCGTTGCATTTTCGagaagtaATAAAGTGACGTATGAGGAGGATGTGTCTCTGGCAGATCTACCTGATGTCGAACCTCAACATGAAAACGTTACCCAGCGAGTCTGGGCTTACCTTAAAGTCAAACAGCTGCTGAAAAAAGAATTGACTCTTACGGGGGCGGAGAAAGAAGCAGCCAAGAAAGAAGCTCTGGATCTCTCTCTTCAGTACAGTTTTGTGACTCCACTAACGTCTATGGTGGTCACCAAACCCCAGAAATCAGACACACAGATCGCCCACAAACCTGAAGAGGgaggaggaagaggagaaggaggaaggGTAGGACTCTTACTACCAATGGTACCATATGGAGGAgGATCTTATGGACAGCCAGcAGGTGGAGGAAGCAGATTAGTAGCAGGAGGAGGATATGCAGGAGGAATAACACAAATATCAAGTGGATCAGTAGTAACAGGTGGAGGAAGCAGATTAGTAGCAGGAGGAGGATATGCAGGAGGAATAACACACGGATCAAGTGGATCAGCAGTAAGCAGAGATTTCTCCTCCGCATCGATAGTTCAAGAACAAGTGATATCTGGACTGCTAGGACCACCTGGACAGCCAGGGCTTTCTGCACACCCAGTGATATCTGGACTGCCAGAGATAGTTCAACAACAAGTGATATCTGGACTGCTAGGACCACCTGGACAGCCAGGGCTTTCTGCACACCCAGGTCTGCTCATTTCCTCTTATTTATTATCTGcTGCAGTGAAGTCCGTGAGGTTTTTAATCTCCTCTAGTGGTCAGTCTAAGCCTCTCTGCTACGACGTTCCTTCAGCTTCCAAACTCCTACTTCTGAAGGACCTCTCTTCAGAATTCTCTATGAGCGGTAAGCTGACCCAATCCGGGACGGGTTTCGATCAAATTGCACTTCATTATAAAACGGATCATCACCTGAGCGTCAGCACCGCTGATATCATCTTCTCTGACGGTCAGAATACGTTCATGCTCCTTTGGGGGCAGGAACTCACCGTGCATCAGGCAGACGGTGTGTCGGTGATTCTGAGGGACAGTGAACTGGACGTCACTTTGGGAGGAGTGCGTGTTGTGATTCTGCTTCATAAGGAAGGTGGAAATGTGTTTCTCTGGCCTGCTGTTCGTCAGCAACCCAAGCATGACAGCTTACAGGGCATTCTGGCAAAAACCAGCCTGCAGTATGAGGAGCTGCCTGGATTTATAATCAAAATCAGTGATCAGGAAGAGGCTGCATCCTTgaGCACCGCTAAAGACTACAGACTCTCTTCAGCCCCGAGTGTTGGATGCTGGCTGGTACGGCTGCAGTTTGCTCTGCAGGGAGAGCTCTCTGACTTCACTGTGACTCAGCTTTAGAGAAAACATCCTTTTTTCCAGAgcgagaagaaagagaaaagaatcaGTTTTGGttgaaaataaaatgctttaatgttaGAAGCTGGAAAGCAATGCTGGTATAAACTGTAGAAAGAGACGTGTGAGTAGTGCTGCTTTACGCTTAATGTTTGAACTGGTGATCTGTCTGTGATGAGTGACGTAAATTACAGTAAACTGTAAATTAGAGCTGAACCgcaaattatattagagtagtaATATGTCAAGATGTTTGTGGATATGGTTGGTAACGTGTGAatgaaaaaagtttaatgtaacaataaaaaatgaaatggcaAAATCTCAAAA

Function

GO:

id name namespace
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0006508 proteolysis biological_process
GO:0050817 coagulation biological_process
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682847.1 True 3216 mRNA 0.48 32 19282103 19312759

Neighbor

gene id symbol gene type direction distance location
LOC103038392 NA coding downstream 1107 19258732 ~ 19280996 (-)
LOC103038073 NA coding downstream 42434 19217715 ~ 19239669 (-)
LOC103035880 LOC103035880 coding downstream 68447 19206055 ~ 19213656 (-)
LOC103035575 NA coding downstream 78773 19199678 ~ 19203330 (-)
rad54l2 rad54l2 coding downstream 334710 18927027 ~ 18947393 (-)
LOC103037635 NA coding upstream 3059 19315818 ~ 19346307 (-)
LOC103044861 NA coding upstream 45654 19358413 ~ 19390900 (-)
LOC103044542 NA coding upstream 79034 19391793 ~ 19417508 (-)
LOC103044255 wnk2,LOC108443687,LOC107743253,LOC107694869 coding upstream 111281 19424040 ~ 19486077 (-)
LOC103037097 LOC108443694,LOC107743251,LOC107694868,LOC107578651,LOC107696460 coding upstream 221908 19534667 ~ 19564176 (-)
G191329 NA non-coding downstream 29014 19252876 ~ 19253089 (-)
G191328 NA non-coding downstream 32650 19249204 ~ 19249453 (-)
G191326 NA non-coding downstream 52929 19228734 ~ 19229174 (-)
G191321 NA non-coding downstream 85717 19194927 ~ 19196386 (-)
G191296 NA non-coding downstream 182279 19045406 ~ 19099824 (-)
G191339 NA non-coding upstream 15207 19327966 ~ 19328622 (-)
G191337 NA non-coding upstream 105472 19418231 ~ 19428960 (-)
G191338 NA non-coding upstream 220187 19532946 ~ 19562551 (-)
LOC111195401 NA non-coding upstream 297625 19610384 ~ 19618060 (-)
G191357 NA non-coding upstream 307417 19620176 ~ 19620410 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 379818 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 483188 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 966766 18311452 ~ 18315337 (-)
mrpl20 mrpl20 other downstream 1068573 18139363 ~ 18213530 (-)
LOC103036492 card19,LOC108443695 other upstream 198562 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 1786588 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 2117257 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 2198165 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 2534210 21846969 ~ 21851642 (-)

Expression


Co-expression Network