LOC111195449


Basic Information

Item Value
gene id LOC111195449
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 19887079 ~ 19891108 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682848.1
CTCCAGGTGACTCCTGCTGGTAGAGGTTTAGTTCATCTGAACTGTATTCCTCAATATCCCTCAGTGCCTCAGTGTAATTTCTATTCAGACGAACAGCAGAGAAATATCAGATCTTCTTCCTGTCagttctcactcactctgtctgatCTGATCACGTGGGTCGGACACAGTTCTAGCTCACTTAAACCGATTAACATTATTTGCAACCATCCTGTGAAAACATCCACTAAAGTGCTGATGTCTCCAAACTCTCTCCCAGCAACAGTGAAGATACTGGGTAACAAACCAAAACTGACCATCAGTCATAATGAGCAGAGAAATGAATTCACTCTGGAGTGTGAAATATGGCTGCATCAGTCTCTCAGTGCTGATAGTAGATGTAATTTCTACATCGGAGAGATCAGTGACTTGTGGAAAATGTCTCAGAAGAGGGAATCTGGCTCACTGGTTTGTAGTTTTATAGTACCTAAGACTCTCCTGTCCAATTATATACAGAAAGCAAAGAGCACAGTAGTGAGCTGTGATTATTCACTAATCTCTGAGCCAGCCGCCCACTCTCCCCTCAGTGACCTGTTCGACCTTAAAGTGATGAGcctgagtgtttcagtttcCTTTACCACCTCCTCTACCACCTCTGTCACCACGAACATGCCAACAACTATTCCCTCTACCACCTCCTCTACCACCTCCTCCATcaccacctccatcacctcctTCATCACCACGACCAGGCCAACAGCTAGTGAGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682848.1 True 750 mRNA 0.45 4 19887079 19891108

Neighbor

gene id symbol gene type direction distance location
LOC103043652 LOC108440521 coding downstream 94615 19785574 ~ 19792464 (-)
LOC103035977 tkta,LOC108443693,LOC107578334,LOC107582382,LOC107743250,LOC107694867 coding downstream 283058 19575698 ~ 19604021 (-)
LOC103037097 LOC108443694,LOC107743251,LOC107694868,LOC107578651,LOC107696460 coding downstream 322903 19534667 ~ 19564176 (-)
LOC103044255 wnk2,LOC108443687,LOC107743253,LOC107694869 coding downstream 401002 19424040 ~ 19486077 (-)
LOC103044542 NA coding downstream 469571 19391793 ~ 19417508 (-)
LOC103042725 LOC103042725 coding upstream 21767 19912875 ~ 19917461 (-)
traip traip coding upstream 352617 20243725 ~ 20253893 (-)
LOC103041184 LOC107715794,LOC107659533,LOC107575741,LOC107685972 coding upstream 611200 20502308 ~ 20622494 (-)
LOC103032600 arl8b,LOC103032600,LOC107095653,LOC108435203,LOC105934196,LOC108255114,LOC107385792,LOC103386496 coding upstream 904305 20795413 ~ 20807451 (-)
bhlhe40 bhlhe40 coding upstream 925489 20816597 ~ 20821524 (-)
LOC111195457 NA non-coding downstream 395 19880925 ~ 19886684 (-)
G191429 NA non-coding downstream 23067 19810655 ~ 19864012 (-)
G191419 NA non-coding downstream 100728 19786115 ~ 19786351 (-)
G191418 NA non-coding downstream 102090 19780171 ~ 19784989 (-)
G191402 NA non-coding downstream 129317 19747700 ~ 19757762 (-)
G191484 NA non-coding upstream 119370 20010478 ~ 20068271 (-)
G191491 gnai2,LOC105909893,LOC103358732,LOC101079922,LOC104930488,LOC103465228,LOC102228806,LOC104958439 non-coding upstream 178581 20069689 ~ 20146623 (-)
LOC111195458 NA non-coding upstream 257510 20148618 ~ 20153059 (-)
G191507 NA non-coding upstream 290779 20181887 ~ 20243173 (-)
G191518 NA non-coding upstream 378513 20269621 ~ 20271923 (-)
LOC103036492 card19,LOC108443695 other downstream 358499 19511321 ~ 19528580 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 984794 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 1088164 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 1571742 18311452 ~ 18315337 (-)
LOC111195395 NA other downstream 1710915 18167240 ~ 18176164 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 1208239 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 1538908 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 1619816 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 1955861 21846969 ~ 21851642 (-)
alas1 alas1,LOC106583798 other upstream 2458239 22349347 ~ 22362458 (-)

Expression


Co-expression Network