LOC111195450


Basic Information

Item Value
gene id LOC111195450
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 22286609 ~ 22293538 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682854.1
AGGAGCTCCACACCAGCATCTCCTCACCCGCCTGAAGaaatccaaaaacatggaattCTGGGATGGAAGAGAGAGGCATGCATCGCCATATGGAAAGTACAGAACTGTTCCTGGGTGGAGCTCATCCTCACACATATATCCTAGCAAGACTCCTGCAGCACCCAACCCAGAGCCCAGAGCTGAGTACCAGGGCTGGATGAGTCAACCAAGCAGTTGGATGATTCCAGGGTCGAGAACTGCTGGGACTATGAGAGACTATGTAAACTGGACTGACATAGCACCTTCATCACGCTGTCCTCCTGAAAATCTGCACTGCCCTCAAGAGTTAGCTACTACATACAGTGGTCAGGAGAGAGGTTTAGACGGACAGAGTGTTCTGTCAGACCGACACAGAGAAAAGGAGAGGCTGGTACAAAGAGGGGAGTTGGCAAATAAATGGCAAACTTGCAGTTCAACTCTTCAccgaaaagaaaaggaaaaacttAGTGCCAACAGTTTTCGAGAGCTGGAGGCTTGGGCCAACCGTTATTACCACTCTCTGCCCAGACAAAGGCATCTAGAAGCAGGGAAGTGGAATGCAACTCAGAACTTTCCGGAATGTGAAAGGATGTCAAGGCCTGCAAGGAAGATAGTTGGTCCAGAACCCAACCAACTGCCCCCTGCAAACACTTCTGTCCCACATAATCAAGAAAAGAGCAACCTCAATAACAGACTGAGGGCTCAGTTGGAGGCTTGGAAGGCACAGCAACTACCTTCTTATGTACCAGCAAAGCAGAGTCCTTCAAGGAAGAATACAGTCCTGAGCCAATCTTTCAGCCATCCCCCAAATTACATGTCCCCACCACCATACAGTGGTCCACAGGATACAAACATCATGCAGGTACCTGGACAATGCACAGCAAAGGCCAGGGCTGAACCCATGATGGAGTACAGAGTTGAGAGCAGACCGGTTACCTCTGCATTTCCTGTGCCAAGAACATCAGATCATTCCTTTGTCCCCTCGATGGAGGGAAGACAACACATAGCACATCCATCAAATGATGTGATCTCAAGAAATTTAGATTTGACTTACCCTGAAGCAGATCAAGCCAGGAAACAGCAAATGCTGTTAAGCACACTTGCAAAATCCCTTGCTGTTAAACAGCAGGCAGTCCAGAAGCAAGAGGCTGCCATGCCACAAGAATCATCACATCAGATCTCTGAGAAAAATCAGATGTCCTACTTGGATGATGCGCTCCCCCAGCAGTGCAAACCCAAAAAAAGAAGAGGTGGAGAGACAGTGTTTTGCTTGGTCTCTCGTATGGGTGAACTAGCTGGATTGTCCAGTTCCCCTGATGAACCACTCAAATCCCACTCGCTGCCTCTTCTAAACGTCCCAACTCCTGGAGGTACAAAAGCAAAGCAGAGTTGTGAAAGGCAGCAAGAAAGCCAAGAGCCAGTTAAGCTGGCAGATGAAGTCGATTCTGAATCTTTAATGCCCCATAAAGTAGAGGAAGTTATATCTGAAAGAAATCAAGACAAGACTTCTGAGCAGATCTTAACAGATCAGGAAGTTACCAACAAAGAAAGACTACAGAGAGAAATTCAGGAGACTTTGTTGGCAAAACATACTGTAAAACAATGCTTTCAAACTATCAAAGAAAGTGAAGACCCTAAAACCAGTGTACCTTATAAGGTAGAAGGAAGTATTGATCCTTGTGTATCCTCTGAATCTCCTCTAGCACCTGAGACAACCGAGAGCCTGGTGGCACCACACAGTAATCAAACCACAGTAAAATTCCCTGTATGGAAGGAACCAAAACGGCACAACTGCTCAAAAGAAAAGCCAAACAAAGATATTAGTAATGTAGGCCAAAAAGAAGAAGCAACTGACGCACAACCAAAGCAATCAGAAGTCAGACATAATATTAACACAATCAAAGACAAGAACAGAGGTCTTGTGGTCATAGATGCTACTTGCGTTGTCGTTAAAGTTGAGTTCATCTTTCCTCCTGAAAAGGAGCATGTCCAGTACGTGTGTTCACGTTCAAGTGACTCATATGAACACAGCTCAGAATCTCTGAACCTTCAAGTCCAAAATGATGACCACAGTAACAATGATACAATAGGTGCAATGGAGAAAAGTTCTGTTGCAAACAATTTGCAGGAAGTTCACGTGCAAATCCAAGAGAAGCACGATGATGATTTGAGGAACAGAAGTCCAATAAATGTTTTGAGTGACATAGTTCTTAAAGATCCaaaccaaattccaaatgaggTCATTTCTGAAAATGAAACTCTCAAGGAAAGAGCAGAAAGGATTCTTGGAATTACATTCCAGAATTCCAGCAATGAAGGGCATACACTGGATGAGCTGCCTCAAATGTCCGAAACAAAAGAGGATCTCCAAAGGATTCAAGAGGAGCCAGAGGGATGTTCTGTAGCTGAAGTTGATGTTGTCTGGAATACGGAAAGTCAGTTGATTGGAGAGGAATCATCTGATAATCTTGAACCCCCAACAAAGGAGACCTCAGGGTTGATGACGAGTACCGAAGGGATTCTAGAAGAATCGGAGGTGAATCTCGTAGATAGTGTAAAGACACTTCAAACACATGAGGTCATTGCAGTTGAAGTTACTAAACAGGAAAATGAAGACACTTCAAAAGACGATAAAGCTATGCTGCAAGAAATTTTTACAACACAGAATACAGAAGCTGAGTCAAGATCCAATTCTGACATTGAAACTATCCAATATCTGAACAATAGTTTAGAGGGCAAAGTCAACAGATGTACCTCTAATGAAACAAGTGGCACAAATGTTCTCCTTTTATCTTTCTTTGATGACTGTGTGGAAAAAACAACCCAGTCTTTCCACCAAGAAGGTAGTCCCAGAGAGGGTAATCCATTGTGTGATGAAAATAACACCTACTCAACCCTCCCAGATGATTTGGTTGAAGACAGTTGTAAGATTCATACCCAGGAAGAAACTCCAGGTGAGGGCATTCTCTCAAATGACCTGCAGATTCTTTGCCCAACCCTAATTCAAGACTTACCTGAGGAGGGTGACTCTTTATTAGAAATGGGTGACAGCTATGATGAACACAATGAATCATTTGACAAAGAAGGAACCTCCAGAGACAGTGGGACTTCAAATGCAACTGATGATGTAGGCAATCAAATGGAAACCTTTATGGAGACTGCTGGTGAATTCATTGGGCAAAGAGATGCTACCAGCCTTTCAGACAAAAACGATGACAAAAAGAATACCTGCTCTCTTCTTGGCCACTCTGTAGAGGGCACAATTGAGCCGGAATTTAGCCAAGAAGGTACCCTCTTTAATGAACCAGATGACCTGCAGAACATTTGTCCATCTGTTCTTGGCAAATCTTTGGAAGGCCCTAGTGAAATAGTTATTCAAGAAGCTCCTAGTTCCAAGGAGGACGTCCCGTCAAATCCATTTGGAGAGAAAGATCCAGGGGAGTGCATCCCCTTAGATGAAATGGATAGCATTGAAAATGTACGTTCAGGCTTCTTTGATGACCATGTAGAAGACAATTGTCAGAGATACTGTCCAGAGCAAAGTATAGAGGATGCCAACGAGTCAAATAAAGCTGTTAGTAGCTCTGTGAAAGATTTGAATGATCAAGAAAGTAAACCCAAAGAAAGTTCCCAGTCAACTGAACAAGATGATGCCAGCGTTCCTGGTCTAGTTCTGCATCTTGACTCTAGCAAACCATATAGAAAAGAGGGTGGGCTCATGGAGGGTAACCTCTCAGATGAAGCAGATGGCACAAGGATTCCTTGTCCAATTTTTTGTAACTCTGATGAAAATAAAAGTCAGTTGGTAACTGAACAAGAAGACAGTTACCAAGCATTTGGAACCTCAGATAAAACCGATACTGTACAGAACCTTCATGGAACTCTTCATGGAAGTTTTGAGAAAGACTTGCTTGAGTTGTCTTGCCAGGAAAGCAGATCCAACAAGGATAGCCTCTTGAATGAAACAGAGGATGTGAACATAATGGACCATGGAGATATCTCACTTCTGGCACTTTCAGCACTTTATTGTTCCACTCTGCATGAACAAGAGTCAACTTCCCAGTCACCTCCTGATTCTCTGTCACCCTGTTTGTCTGAATCTTCTCAAAAGCTGAACAAATGTTGTTTATTGACACCATCACTTCTTGAGACTTCTTGTTCAAGTTCACAATCTGAACATCAGAATGAATTATTGTCGCTTTTCTCTTTTCAAACTGACATCAACCCTTCAACTCTACCAACTCCAGATTGTTCTGATCACTCTCGACTTCTGGAGAGCTGCTCTCAGACTGGTAACATTCACTGTGAGGTCTGGTCTCCAACTTCTTCCACGTCAACAAAATGCACGAAAAAGCAGTATCCCAAATCATTGTGGGACGCAGTGAACCGCATTCGTAAACACACCGCACCTGATTCAGAAACCGAAGACGAGGAGAGCGGAGTTGAACTTTGGGAACAAATGGAAAACACCGTTGTGGAAGATCACTTAACTGATGACACGGAGGTGCAACTGCAGGAATCTGTCCTGGAAGAGGGAAGAATAGGTGACATTATTGAACGTAATGATGATAAAGAGCAAAATTCACCAGCAAAAGTCTCCATCGTATCTGATATGTATCTGGTAGATGGGACTATCGAGAAAGGCATTCCATTAGAGGAACAGGGACATTTGGACGAGGTCGAGAGGACAGTAGACGTAGGTCAACCTGAAGATGATACTCTGTCCAGCAGCAGCCTGGACAGTCACGATTCAAACAACACAGTTATTGAGGGAGAgggaaatgaaaaaatattggaaagTGATACAGAAGAAGATGGGAACAATGAGGAAGTACTTCAGACACCTTATTTGATCAATAAGAATAAAGGAATTTCCAGTGAAAAGCTGGATTTATCCAGTGTCTTGGAGGAAGATGACAACTGTGAGATTTCTGCGGTTTTCAAAGATAAtcaataa

Function

GO:

id name namespace
GO:0015250 water channel activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682854.1 True 4975 mRNA 0.43 3 22286609 22293538

Neighbor

gene id symbol gene type direction distance location
LOC103037062 LOC108424641,LOC106583265,LOC103359365,LOC100304514 coding downstream 1952 22259659 ~ 22284657 (-)
ctdsp2 ctdsp2,LOC106583267,LOC106565429 coding downstream 38992 22237447 ~ 22247617 (-)
avil avil coding downstream 57521 22207122 ~ 22229088 (-)
tmbim6 tmbim6,LOC106583271 coding downstream 80913 22190824 ~ 22205696 (-)
LOC103023479 tnnc1,LOC103023479,LOC108424583,LOC106571909,LOC103385538 coding downstream 273650 22005434 ~ 22012959 (-)
eef1akmt3 NA coding upstream 4314 22297852 ~ 22303090 (-)
LOC103024753 LOC108424569 coding upstream 166920 22460458 ~ 22639548 (-)
LOC103040317 faim2 coding upstream 399538 22693076 ~ 22705489 (-)
LOC103040941 ndrg3,LOC108412994,LOC107655061,LOC107727846,LOC107749481,LOC107562126 coding upstream 446195 22739733 ~ 22782472 (-)
LOC103042162 LOC108412995 coding upstream 512043 22805581 ~ 22840324 (-)
G192005 NA non-coding downstream 27813 22257915 ~ 22258796 (-)
G191898 NA non-coding downstream 284429 21999172 ~ 22002180 (-)
G191884 NA non-coding downstream 319897 21966509 ~ 21966712 (-)
G191880 NA non-coding downstream 328177 21957841 ~ 21958432 (-)
G191870 NA non-coding downstream 361761 21860126 ~ 21924848 (-)
G192009 NA non-coding upstream 14069 22307607 ~ 22309156 (-)
G192012 NA non-coding upstream 48854 22342392 ~ 22342630 (-)
G192014 NA non-coding upstream 72470 22366008 ~ 22366333 (-)
G192120 NA non-coding upstream 113708 22407246 ~ 22441456 (-)
G192137 NA non-coding upstream 238916 22532454 ~ 22532716 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 434967 21846969 ~ 21851642 (-)
elmo2 elmo2,LOC106583331 other downstream 741778 21510924 ~ 21544831 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other downstream 850156 21430016 ~ 21436453 (-)
brk1 brk1,BRK1,LOC106565571 other downstream 1183391 21099347 ~ 21103218 (-)
LOC103036492 card19,LOC108443695 other downstream 2758029 19511321 ~ 19528580 (-)
alas1 alas1,LOC106583798 other upstream 55809 22349347 ~ 22362458 (-)
amhr2 NA other upstream 416011 22709549 ~ 22722905 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other upstream 492625 22786163 ~ 22803642 (-)
G192251 adipor1,LOC107749488,LOC107385668 other upstream 761095 23054633 ~ 23058805 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 1745708 24039246 ~ 24105898 (-)

Expression


Co-expression Network