LOC111195461


Basic Information

Item Value
gene id LOC111195461
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 23798758 ~ 23801417 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682864.1
agttaactaacacacataaaacctagctaactaacacacataactctagctaactaacacacataaaaCCTAGCTACCTCAGCTAACTAATTCTAAAAATTAGAGTCACAAAGTGTCCTCGTCAGATCTGGGGGTTAAATAAGCTGGAAAACATCccaatatcttgattactagtttaaATTCAGTCAAATACAGAAGAATAACGACCTGAAGATGTTTAAAAACGGTACTAATACCTTAAAATGTACAGGTAACCAGTGGAATTAGTGgcactagctagctagctagcctggTGGTCACCATGGCTACTGCAGAAGAGATTCCTCTGACATCACAGGTATGACATCACACCTGAGCCCATATAAGCAGGATTCCATCAGTTCGGGTTCAGACTAGAGCTAGGAGCCACAGTATAAGGACTTCGGAGGAAATCTTGTAGTTACTGAGGACGAGCAGCTTTAGTGAAGAATGTCTTTACTGAACTCTGTAAAGACTGCGGTTCAGTGACCGGTGAAGATCAACCGGCAGAGTTGGGAGAACTTCCAGCACGGGAAGACCAACTGCCCCAGCAGGAGAGAGAAACGTTCCAATGTGTTAATGGACGGACGTGAGGACGCTCTTGCACTGACACAGGCCAGACTCCAGCTGGAGAGAGATACCGTCGTTAGCACTAGTGTACCGTCTCGTAAAAGGAAGCTGGCGGAGACACCAGAGGATGAAGCTCCAGTAGTGAAAAAGGCTCGAATGCAGCTGGAGAGAGATACCGTCGTTAGCACTAGCGTACCGTCTCGTAAAAGGAAGCTGGCGGAGACACCAGAGGATGAAGCTCCAGTAGTGAAAAAGGCTCGAATGGAGCTGGAGAGAGATACTGTCTTTAGCACGAGCAGAACCTCTCGTAAGAGGAACCTGGCGGAGACACCAGAGAATGAAGCTCCAGTAGCGAACAAGGCTCCAATCCAGCCGGAGAGAGGTGCATTATGGGACAGATGTCCGTTTGATACTGTCTTTAGCACTAGCGGAACCTGGAGGAACCCGGAGAAGACACCAGAAGATGAAGCTCCAGTAGTGAAAAAGGCTCCAATCCAGCTGGAGAGAGctcCTCCCACGGTATGGATCATAGGGGACAGCTATATTCGTCGTGGGGAGGAGATAGCGAGGAGCTCACTGGGAGGTGACCTGGGAGTGAAGGCCAAGGTCAGCTGGTTCGGCTGGGGAGGACTGAGGTGGCGAGGCCTCGTCCCGTTCTTCAACAAGTCTCTGAGAGGAAGAACGGCTCCGGACGTGCTGATCATCCACTGTGGAGGGAACGACCTCGGAGGGATGAACGCCGTTCATCTCATCGCAGAGATGAAGGTGGATCTGCTTGATCTCCACCGTCGTTTCCCACACATGAAGATCATGCTGTCAGATATCACCCCAAGACGTCAGTGGAGGTCCACCATTCACCCTAAGCAGATCGACATGGCCCGGAAATGCGTAAACCGCGAGATGGCCGACTTCATTTTGGGAGTGGAGGGGGTTGTTATTCATCACCCGAATATCCTGTTCTACAACCCTCGGCTCTTTCTCAGAGACCGGGTTCACCTGTCTCCTTTGGGCAACgaactgtttttaaatgacattGCAGAATCCCTAAAATCCTTCATCAAATAAATGTGATTCTGCTGAAATCATCTGGATTCATCTGGATTAATTCAACACTGAGAAACACCAGGAGACTGAGGACTTTACAGTGTAATGAAATCAACAACTCAGTATTAGATGctaataaatgttaaagttttatgttatataatattaaaaatctgtACACTTAAATAAagtctattttgtaaacaa
>XM_022682865.1
agttaactaacacacataaaacctagctaactaacacacataactctagctaactaacacacataaaaCCTAGCTACCTCAGCTAACTAATTCTAAAAATTAGAGTCACAAAGTGTCCTCGTCAGATCTGGGGGTTAAATAAGCTGGAAAACATCccaatatcttgattactagtttaaATTCAGTCAAATACAGAAGAATAACGACCTGAAGATGTTTAAAAACGGTACTAATACCTTAAAATGTACAGGTAACCAGTGGAATTAGTGgcactagctagctagctagcctggTGGTCACCATGGCTACTGCAGAAGAGATTCCTCTGACATCACAGGTATGACATCACACCTGAGCCCATATAAGCAGGATTCCATCAGTTCGGGTTCAGACTAGAGCTAGGAGCCACAGTATAAGGACTTCGGAGGAAATCTTGTAGTTACTGAGGACGAGCAGCTTTAGTGAAGAATGTCTTTACTGAACTCTGTAAAGACTGCGGTTCAGTGACCGGTGAAGATCAACCGGCAGAGTTGGGAGAACTTCCAGCACGGGAAGACCAACTGCCCCAGCAGGAGAGAGAAACGTTCCAATGTGTTAATGGACGGACGTGAGGACGCTCTTGCACTGACACAGGCCAGACTCCAGCTGGAGAGAGATACCGTCGTTAGCACTAGTGTACCGTCTCGTAAAAGGAAGCTGGCGGAGACACCAGAGGATGAAGCTCCAGTAGTGAAAAAGGCTCGAATGCAGCTGGAGAGAGATACCGTCGTTAGCACTAGCGTACCGTCTCGTAAAAGGAAGCTGGCGGAGACACCAGAGGATGAAGCTCCAGTAGTGAAAAAGGCTCGAATGGAGCTGGAGAGAGATACTGTCTTTAGCACGAGCAGAACCTCTCGTAAGAGGAACCTGGCGGAGACACCAGAGAATGAAGCTCCAGTAGCGAACAAGGCTCCAATCCAGCCGGAGAGAGATACTGTCTTTAGCACTAGCGGAACCTGGAGGAACCCGGAGAAGACACCAGAAGATGAAGCTCCAGTAGTGAAAAAGGCTCCAATCCAGCTGGAGAGAGctcCTCCCACGGTATGGATCATAGGGGACAGCTATATTCGTCGTGGGGAGGAGATAGCGAGGAGCTCACTGGGAGGTGACCTGGGAGTGAAGGCCAAGGTCAGCTGGTTCGGCTGGGGAGGACTGAGGTGGCGAGGCCTCGTCCCGTTCTTCAACAAGTCTCTGAGAGGAAGAACGGCTCCGGACGTGCTGATCATCCACTGTGGAGGGAACGACCTCGGAGGGATGAACGCCGTTCATCTCATCGCAGAGATGAAGGTGGATCTGCTTGATCTCCACCGTCGTTTCCCACACATGAAGATCATGCTGTCAGATATCACCCCAAGACGTCAGTGGAGGTCCACCATTCACCCTAAGCAGATCGACATGGCCCGGAAATGCGTAAACCGCGAGATGGCCGACTTCATTTTGGGAGTGGAGGGGGTTGTTATTCATCACCCGAATATCCTGTTCTACAACCCTCGGCTCTTTCTCAGAGACCGGGTTCACCTGTCTCCTTTGGGCAACgaactgtttttaaatgacattGCAGAATCCCTAAAATCCTTCATCAAATAAATGTGATTCTGCTGAAATCATCTGGATTCATCTGGATTAATTCAACACTGAGAAACACCAGGAGACTGAGGACTTTACAGTGTAATGAAATCAACAACTCAGTATTAGATGctaataaatgttaaagttttatgttatataatattaaaaatctgtACACTTAAATAAagtctattttgtaaacaa
>XM_022682866.1
agttaactaacacacataaaacctagctaactaacacacataactctagctaactaacacacataaaaCCTAGCTACCTCAGCTAACTAATTCTAAAAATTAGAGTCACAAAGTGTCCTCGTCAGATCTGGGGGTTAAATAAGCTGGAAAACATCccaatatcttgattactagtttaaATTCAGTCAAATACAGAAGAATAACGACCTGAAGATGTTTAAAAACGGTACTAATACCTTAAAATGTACAGGTAACCAGTGGAATTAGTGgcactagctagctagctagcctggTGGTCACCATGGCTACTGCAGAAGAGATTCCTCTGACATCACAGGTATGACATCACACCTGAGCCCATATAAGCAGGATTCCATCAGTTCGGGTTCAGACTAGAGCTAGGAGCCACAGTATAAGGACTTCGGAGGAAATCTTGTAGTTACTGAGGACGAGCAGCTTTAGTGAAGAATGTCTTTACTGAACTCTGTAAAGACTGCGGTTCAGTGACCGGTGAAGATCAACCGGCAGAGTTGGGAGAACTTCCAGCACGGGAAGACCAACTGCCCCAGCAGGAGAGAGAAACGTTCCAATGTGTTAATGGACGGACGTGAGGACGCTCTTGCACTGACACAGGCCAGACTCCAGCTGGAGAGAGATACCGTCGTTAGCACTAGTGTACCGTCTCGTAAAAGGAAGCTGGCGGAGACACCAGAGGATGAAGCTCCAGTAGTGAAAAAGGCTCGAATGCAGCTGGAGAGAGATACTGTCTTTAGCACGAGCAGAACCTCTCGTAAGAGGAACCTGGCGGAGACACCAGAGAATGAAGCTCCAGTAGCGAACAAGGCTCCAATCCAGCCGGAGAGAGGTGCATTATGGGACAGATGTCCGTTTGATACTGTCTTTAGCACTAGCGGAACCTGGAGGAACCCGGAGAAGACACCAGAAGATGAAGCTCCAGTAGTGAAAAAGGCTCCAATCCAGCTGGAGAGAGctcCTCCCACGGTATGGATCATAGGGGACAGCTATATTCGTCGTGGGGAGGAGATAGCGAGGAGCTCACTGGGAGGTGACCTGGGAGTGAAGGCCAAGGTCAGCTGGTTCGGCTGGGGAGGACTGAGGTGGCGAGGCCTCGTCCCGTTCTTCAACAAGTCTCTGAGAGGAAGAACGGCTCCGGACGTGCTGATCATCCACTGTGGAGGGAACGACCTCGGAGGGATGAACGCCGTTCATCTCATCGCAGAGATGAAGGTGGATCTGCTTGATCTCCACCGTCGTTTCCCACACATGAAGATCATGCTGTCAGATATCACCCCAAGACGTCAGTGGAGGTCCACCATTCACCCTAAGCAGATCGACATGGCCCGGAAATGCGTAAACCGCGAGATGGCCGACTTCATTTTGGGAGTGGAGGGGGTTGTTATTCATCACCCGAATATCCTGTTCTACAACCCTCGGCTCTTTCTCAGAGACCGGGTTCACCTGTCTCCTTTGGGCAACgaactgtttttaaatgacattGCAGAATCCCTAAAATCCTTCATCAAATAAATGTGATTCTGCTGAAATCATCTGGATTCATCTGGATTAATTCAACACTGAGAAACACCAGGAGACTGAGGACTTTACAGTGTAATGAAATCAACAACTCAGTATTAGATGctaataaatgttaaagttttatgttatataatattaaaaatctgtACACTTAAATAAagtctattttgtaaacaa
>XM_022682867.1
agttaactaacacacataaaacctagctaactaacacacataactctagctaactaacacacataaaaCCTAGCTACCTCAGCTAACTAATTCTAAAAATTAGAGTCACAAAGTGTCCTCGTCAGATCTGGGGGTTAAATAAGCTGGAAAACATCccaatatcttgattactagtttaaATTCAGTCAAATACAGAAGAATAACGACCTGAAGATGTTTAAAAACGGTACTAATACCTTAAAATGTACAGGTAACCAGTGGAATTAGTGgcactagctagctagctagcctggTGGTCACCATGGCTACTGCAGAAGAGATTCCTCTGACATCACAGGTATGACATCACACCTGAGCCCATATAAGCAGGATTCCATCAGTTCGGGTTCAGACTAGAGCTAGGAGCCACAGTATAAGGACTTCGGAGGAAATCTTGTAGTTACTGAGGACGAGCAGCTTTAGTGAAGAATGTCTTTACTGAACTCTGTAAAGACTGCGGTTCAGTGACCGGTGAAGATCAACCGGCAGAGTTGGGAGAACTTCCAGCACGGGAAGACCAACTGCCCCAGCAGGAGAGAGAAACGTTCCAATGTGTTAATGGACGGACGTGAGGACGCTCTTGCACTGACACAGGCCAGACTCCAGCTGGAGAGAGATACCGTCGTTAGCACTAGCGTACCGTCTCGTAAAAGGAAGCTGGCGGAGACACCAGAGGATGAAGCTCCAGTAGTGAAAAAGGCTCGAATGGAGCTGGAGAGAGATACTGTCTTTAGCACGAGCAGAACCTCTCGTAAGAGGAACCTGGCGGAGACACCAGAGAATGAAGCTCCAGTAGCGAACAAGGCTCCAATCCAGCCGGAGAGAGGTGCATTATGGGACAGATGTCCGTTTGATACTGTCTTTAGCACTAGCGGAACCTGGAGGAACCCGGAGAAGACACCAGAAGATGAAGCTCCAGTAGTGAAAAAGGCTCCAATCCAGCTGGAGAGAGctcCTCCCACGGTATGGATCATAGGGGACAGCTATATTCGTCGTGGGGAGGAGATAGCGAGGAGCTCACTGGGAGGTGACCTGGGAGTGAAGGCCAAGGTCAGCTGGTTCGGCTGGGGAGGACTGAGGTGGCGAGGCCTCGTCCCGTTCTTCAACAAGTCTCTGAGAGGAAGAACGGCTCCGGACGTGCTGATCATCCACTGTGGAGGGAACGACCTCGGAGGGATGAACGCCGTTCATCTCATCGCAGAGATGAAGGTGGATCTGCTTGATCTCCACCGTCGTTTCCCACACATGAAGATCATGCTGTCAGATATCACCCCAAGACGTCAGTGGAGGTCCACCATTCACCCTAAGCAGATCGACATGGCCCGGAAATGCGTAAACCGCGAGATGGCCGACTTCATTTTGGGAGTGGAGGGGGTTGTTATTCATCACCCGAATATCCTGTTCTACAACCCTCGGCTCTTTCTCAGAGACCGGGTTCACCTGTCTCCTTTGGGCAACgaactgtttttaaatgacattGCAGAATCCCTAAAATCCTTCATCAAATAAATGTGATTCTGCTGAAATCATCTGGATTCATCTGGATTAATTCAACACTGAGAAACACCAGGAGACTGAGGACTTTACAGTGTAATGAAATCAACAACTCAGTATTAGATGctaataaatgttaaagttttatgttatataatattaaaaatctgtACACTTAAATAAagtctattttgtaaacaa
>XM_022682868.1
agttaactaacacacataaaacctagctaactaacacacataactctagctaactaacacacataaaaCCTAGCTACCTCAGCTAACTAATTCTAAAAATTAGAGTCACAAAGTGTCCTCGTCAGATCTGGGGGTTAAATAAGCTGGAAAACATCccaatatcttgattactagtttaaATTCAGTCAAATACAGAAGAATAACGACCTGAAGATGTTTAAAAACGGTACTAATACCTTAAAATGTACAGGTAACCAGTGGAATTAGTGgcactagctagctagctagcctggTGGTCACCATGGCTACTGCAGAAGAGATTCCTCTGACATCACAGGTATGACATCACACCTGAGCCCATATAAGCAGGATTCCATCAGTTCGGGTTCAGACTAGAGCTAGGAGCCACAGTATAAGGACTTCGGAGGAAATCTTGTAGTTACTGAGGACGAGCAGCTTTAGTGAAGAATGTCTTTACTGAACTCTGTAAAGACTGCGGTTCAGTGACCGGTGAAGATCAACCGGCAGAGTTGGGAGAACTTCCAGCACGGGAAGACCAACTGCCCCAGCAGGAGAGAGAAACGTTCCAATGTGTTAATGGACGGACGTGAGGACGCTCTTGCACTGACACAGGCCAGACTCCAGCTGGAGAGAGATACTGTCTTTAGCACGAGCAGAACCTCTCGTAAGAGGAACCTGGCGGAGACACCAGAGAATGAAGCTCCAGTAGCGAACAAGGCTCCAATCCAGCCGGAGAGAGGTGCATTATGGGACAGATGTCCGTTTGATACTGTCTTTAGCACTAGCGGAACCTGGAGGAACCCGGAGAAGACACCAGAAGATGAAGCTCCAGTAGTGAAAAAGGCTCCAATCCAGCTGGAGAGAGctcCTCCCACGGTATGGATCATAGGGGACAGCTATATTCGTCGTGGGGAGGAGATAGCGAGGAGCTCACTGGGAGGTGACCTGGGAGTGAAGGCCAAGGTCAGCTGGTTCGGCTGGGGAGGACTGAGGTGGCGAGGCCTCGTCCCGTTCTTCAACAAGTCTCTGAGAGGAAGAACGGCTCCGGACGTGCTGATCATCCACTGTGGAGGGAACGACCTCGGAGGGATGAACGCCGTTCATCTCATCGCAGAGATGAAGGTGGATCTGCTTGATCTCCACCGTCGTTTCCCACACATGAAGATCATGCTGTCAGATATCACCCCAAGACGTCAGTGGAGGTCCACCATTCACCCTAAGCAGATCGACATGGCCCGGAAATGCGTAAACCGCGAGATGGCCGACTTCATTTTGGGAGTGGAGGGGGTTGTTATTCATCACCCGAATATCCTGTTCTACAACCCTCGGCTCTTTCTCAGAGACCGGGTTCACCTGTCTCCTTTGGGCAACgaactgtttttaaatgacattGCAGAATCCCTAAAATCCTTCATCAAATAAATGTGATTCTGCTGAAATCATCTGGATTCATCTGGATTAATTCAACACTGAGAAACACCAGGAGACTGAGGACTTTACAGTGTAATGAAATCAACAACTCAGTATTAGATGctaataaatgttaaagttttatgttatataatattaaaaatctgtACACTTAAATAAagtctattttgtaaacaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682864.1 True 1839 mRNA 0.47 6 23798758 23801417
XM_022682865.1 False 1812 mRNA 0.47 6 23798758 23801417
XM_022682866.1 False 1734 mRNA 0.47 5 23798758 23801417
XM_022682867.1 False 1734 mRNA 0.47 5 23798758 23801417
XM_022682868.1 False 1629 mRNA 0.47 4 23798758 23801417

Neighbor

gene id symbol gene type direction distance location
LOC103041505 pnp4a,LOC103041505,LOC108411380,LOC107727193,LOC107685744,LOC107655042,LOC107727769,LOC107559547 coding downstream 102511 23682209 ~ 23696247 (-)
LOC103042306 NA coding downstream 118367 23673108 ~ 23680391 (-)
LOC103041805 gem,rem1,LOC108411381,LOC107727768,LOC107655086,LOC107727184,LOC107685743,LOC107554936 coding downstream 138466 23648266 ~ 23660292 (-)
LOC103042624 rbm39,LOC107655082,LOC107727761,LOC107602070 coding downstream 162932 23624910 ~ 23635826 (-)
nfs1 nfs1,LOC107601922,LOC107559867 coding downstream 176640 23609253 ~ 23622118 (-)
LOC103046362 maf1,LOC108425756,LOC108254834,LOC107727190,LOC107685718,LOC107602775,LOC106583327 coding upstream 147114 23948531 ~ 23956337 (-)
zc3h11a NA coding upstream 156411 23957828 ~ 23970167 (-)
LOC103040327 LOC108425717 coding upstream 179126 23980543 ~ 23988199 (-)
LOC103040645 chia.2,chia.3,LOC108425699,LOC107555079,LOC107685745,LOC107727181,LOC107655977,LOC107727762 coding upstream 193206 23994623 ~ 24001948 (-)
LOC103040944 LOC108425718 coding upstream 214129 24015546 ~ 24027045 (-)
G192439 dvl1,LOC108411373,LOC107685713,LOC107560111,LOC107749512,LOC107655081,LOC107727776 non-coding downstream 191727 23602319 ~ 23607031 (-)
G192428 NA non-coding downstream 239582 23544535 ~ 23559176 (-)
G192365 NA non-coding downstream 469445 23329074 ~ 23329313 (-)
G192336 NA non-coding downstream 574155 23216176 ~ 23224603 (-)
G192335 NA non-coding downstream 575389 23215590 ~ 23223369 (-)
G192484 NA non-coding upstream 75218 23876635 ~ 23884538 (-)
G192574 NA non-coding upstream 190779 23992196 ~ 24049734 (-)
G192578 NA non-coding upstream 253877 24055294 ~ 24055585 (-)
G192579 NA non-coding upstream 281387 24082804 ~ 24083308 (-)
G192589 NA non-coding upstream 459217 24260634 ~ 24262555 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 739953 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 995116 22786163 ~ 22803642 (-)
amhr2 NA other downstream 1075853 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 1436300 22349347 ~ 22362458 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 1947116 21846969 ~ 21851642 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 237829 24039246 ~ 24105898 (-)
G192815 mdm4 other upstream 1410258 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 2073493 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 2909836 26711253 ~ 26724106 (-)
G193097 NA other upstream 3230246 27031663 ~ 27033089 (-)

Expression


Co-expression Network