LOC111195339


Basic Information

Item Value
gene id LOC111195339
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 27382980 ~ 27384041 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651580.1
TtgaatgtgcattttttttccttcccacCTTGTAAAATCCTGCCTTTGCAgtccactttaaaatatttccaaacaGAGAGGTGTAATACGCTCTTTCGATCTTACAGCTGCTGTTCACactgctaataaataaaaaacaaacccaGTTGATTTTATCGGAGCGCCAGTACCCAAACccgactgactaaaactttcaatCGTAACCACCTTACACTTAACGATTGAGATGACACGACCGCAACTCAACTGCAGCTCGACTCTAGCCAGACTCTAGCCGTGATTTTTATCCtgactctggaaatttgtctgcaacTGTGAAATCATTGGAAAATCGTTATGTACCTGAACTCTCTTCACCCTTAATGTAGCAGCTACCCACTGAATAACTGTTAGCCTGTTCTATAGCGACTGTAATTtccttctgtctgtttcttaCACTCTGTAGgtacttatatatattttttattgaacgtGGCAGCGTGCCGACAATCACAAGTATTGCAAATGTTGGGATAAATTTCAGCCAATTTAACTTTACTAGAATGTGCTCTGTGTACTCTGCAGGTACTTCTAAGGCAGCTAGTTTAAGGCGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGACATCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCTTCAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataataataataattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651580.1 True 938 lncRNA 0.43 2 27382980 27384041

Neighbor

gene id symbol gene type direction distance location
LOC103029919 NA coding downstream 79040 27301296 ~ 27303940 (-)
LOC103046766 LOC108436454 coding downstream 83409 27296666 ~ 27299571 (-)
LOC107197599 NA coding downstream 90171 27287220 ~ 27292809 (-)
LOC103031188 chia,LOC108435172,LOC108255197,LOC108255198 coding downstream 92661 27274657 ~ 27290319 (-)
LOC103032351 LOC108435192 coding downstream 172664 27197051 ~ 27210316 (-)
bcl2l15 NA coding upstream 61438 27445479 ~ 27453376 (-)
kif21b kif21b coding upstream 373186 27757227 ~ 27874978 (-)
LOC103045240 LOC108436365,LOC107592563,LOC107699336,LOC107680449,LOC107751004,LOC108254807 coding upstream 527634 27911675 ~ 27955052 (-)
LOC103028137 LOC103028137,LOC108436315,LOC104939458,LOC108254806,LOC103386138 coding upstream 578326 27962367 ~ 28008609 (-)
b3galt6 b3galt6,LOC107592565,LOC107680432,LOC107699339,LOC107555998 coding upstream 640296 28024337 ~ 28028670 (-)
G193185 NA non-coding downstream 12547 27370175 ~ 27370433 (-)
G193181 NA non-coding downstream 26667 27355978 ~ 27356313 (-)
G193179 NA non-coding downstream 51818 27328742 ~ 27331162 (-)
G193178 NA non-coding downstream 58141 27324406 ~ 27324839 (-)
G193154 NA non-coding downstream 77321 27295728 ~ 27305659 (-)
LOC111195418 NA non-coding upstream 221 27384262 ~ 27386904 (-)
G193198 NA non-coding upstream 5682 27389723 ~ 27390148 (-)
G193200 NA non-coding upstream 16796 27400837 ~ 27401642 (-)
G193223 NA non-coding upstream 104824 27488865 ~ 27506529 (-)
G193226 NA non-coding upstream 109009 27493050 ~ 27494923 (-)
G193097 NA other downstream 349891 27031663 ~ 27033089 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other downstream 658874 26711253 ~ 26724106 (-)
LOC111195415 tfeb other downstream 1504327 25874910 ~ 25878653 (-)
G192815 mdm4 other downstream 2165430 25211675 ~ 25217550 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other downstream 3277082 24039246 ~ 24105898 (-)
LOC111195340 NA other upstream 6753 27390794 ~ 27391571 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other upstream 41001 27425042 ~ 27701331 (-)
tmem167b tmem167b other upstream 626950 28010991 ~ 28015612 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other upstream 810338 28194379 ~ 28213070 (-)
LOC111195343 LOC108434908 other upstream 1192066 28576107 ~ 28586222 (-)

Expression


Co-expression Network