LOC111195377


Basic Information

Item Value
gene id LOC111195377
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 11755397 ~ 11757109 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651605.1
ccaaaagcaaaaacaactaccaagaaaaaaacttaacagaaataattttgcttaaataatttttttactttaagtcaGATAGTTTAATGTCACGTGACCTCGTGACGTCGGGACAAGTACCTTCTCCTTGAGTTTTTCTGTCAGCCATTTTACTTCGCGCCGACTGCCAAGTTCATCTGACCCACAGGACAACTGGTTTAATTAAGGTTTGATCTTGAGCTCTTTTGCTGAAAATTTACATCCATCTCTTCTAAATTTGTTCCTGGCTTGGACAAGCACCAACAGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651605.1 True 288 lncRNA 0.38 3 11755397 11757109

Neighbor

gene id symbol gene type direction distance location
suclg2 suclg2,LOC107729402,LOC107753779,LOC107699794 coding downstream 220982 11372257 ~ 11534415 (-)
lrig1 lrig1,LOC107716980,LOC107557776 coding downstream 599652 11080123 ~ 11155745 (-)
LOC111195430 gria2,LOC108411138 coding downstream 895499 10834016 ~ 10859898 (-)
lrrc38 lrrc38,LOC108439497,LOC107685631,LOC108281009,LOC107691331,LOC107555684,LOC107568719 coding downstream 1471483 10224975 ~ 10283914 (-)
LOC111195372 LOC108410896,LOC108414677,LOC108416243 coding downstream 1652504 10094323 ~ 10102893 (-)
fam19a4 fam19a4,fam19a4b,LOC107655986,LOC107600333,LOC107729393,LOC107696804,LOC107558879 coding upstream 300423 12057532 ~ 12115859 (-)
tmf1 tmf1 coding upstream 425010 12182119 ~ 12207582 (-)
hmces hmces coding upstream 473307 12230416 ~ 12236146 (-)
tada3 tada3,tada3l,LOC107656064,LOC106565817 coding upstream 479777 12236886 ~ 12244320 (-)
LOC103042309 LOC108435436,LOC108254777,LOC107677511,LOC104938990,LOC107574463,LOC107715804,LOC107551799 coding upstream 501685 12258794 ~ 12289011 (-)
G188994 NA non-coding downstream 295020 11460088 ~ 11460377 (-)
G188985 NA non-coding downstream 449944 11302749 ~ 11305453 (-)
G188976 NA non-coding downstream 488719 11264762 ~ 11266678 (-)
G188975 NA non-coding downstream 490807 11264039 ~ 11264590 (-)
G188974 kbtbd8,LOC106583033 non-coding downstream 491409 11263525 ~ 11263988 (-)
G189052 NA non-coding upstream 251734 12008843 ~ 12009058 (-)
G189053 NA non-coding upstream 281668 12038777 ~ 12039088 (-)
G189054 NA non-coding upstream 283466 12040575 ~ 12040855 (-)
G189085 rab7a,LOC107093905,LOC101061812,LOC106582926,LOC106518505 non-coding upstream 464181 12221290 ~ 12229525 (-)
G189159 NA non-coding upstream 570649 12327758 ~ 12328365 (-)
G188898 NA other downstream 764003 10990817 ~ 10991394 (-)
LOC111195437 NA other downstream 1799080 9951084 ~ 9956317 (-)
ghrh ghrh,LOC103034597,LOC108438619 other downstream 4335591 7409122 ~ 7419806 (-)
G187946 mybl2,mybl2b other downstream 4364371 7388397 ~ 7391026 (-)
pdrg1 pdrg1 other downstream 4562145 7188616 ~ 7193252 (-)
G189055 NA other upstream 286804 12043913 ~ 12044293 (-)
eogt eogt,LOC107729408 other upstream 403433 12160542 ~ 12178610 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other upstream 540940 12298049 ~ 12395532 (-)
LOC111195455 NA other upstream 855502 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other upstream 857803 12614912 ~ 12619566 (-)

Expression


Co-expression Network