LOC111195385


Basic Information

Item Value
gene id LOC111195385
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 16560501 ~ 16566005 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651610.1
atgctatgctaagaTAACagggcgctgctgctgctgcgggtgACTGTGAGAGAAGAGCAGgcACAACAGTTGTCTTAAAGATGTTTGTGGGACAGGACAAAGACGAAGGACAGGAGTGTTAATACCCGCTCTGCAGCTCCTGATTCGCTGatgttagatttacagattggTGGAGGAGTTAGGAGTTTTTGCGCTGTGGGATGAGGTAGTAGGTTGTGTAGTTTTAGGGTCACACCCACACTGGGAGATAACTATACAGCCTACTGTCTTTCTCAGAGTGACGAGAGAGATCATCGCTATCTGTTCCCTTCAGAAGAGGAGAAACCATCAAAATCTTCATAATATGGACATTAAGGCAGTGTACTGTTATTCTGCGATACTCAGTATATCACATGATAATTACCTGTGAATCACAGGAATGGGCCGTGTGTTGGTGATCTGTGTACGAGCCtcaactgtgcactgtgcagcatgattttaaggcatgtcagtgtgtcttttgctatcgtaacgatgggaaaagtacacatactagtcatgtactaattatcttaatgaggagaattaaataaaccaatcagtgtgtcacttgccatttattttaagagccaggtgagctctgactttggcactcTGCTATTTGGCTGAATGATGTATATTGAAATTTAAACATTCCTGTCACAATATAAACTAATATCAAATGATTGCCCAGCCCTAATGGCTGCATAAACTGTATAGTAACAATTACCTGACTGGATGGGAATCCACAACACTTAGTCATTGTATATTATTATCGTATATTATGAAATAATAAGAAGGATAATATTTTGTTGTACAGTTGTTAAAGATCACGATGCTTTCACAGTGTGAGGTAGTAGATTGTATAGTTGTGGGGTAGTGATTTTATCCTGTTTAGAAGATAACTATACAATCTATTGCCTTCCCTGAGGGGGTGAGACTCACTTAcatataataatttactttttatattcataaattattaCTTTTCTTTATGGTTTTGCACTGGGTTTTTATGTAAGTACAGAAATTATACCATGATTGTTCTTGGAAACAATGAACTTTATTTGTTatgtgaataatttaataaatctgcataataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651610.1 True 1122 lncRNA 0.38 2 16560501 16566005

Neighbor

gene id symbol gene type direction distance location
wnt7a wnt7a,wnt7aa,LOC108424657,LOC107749431,LOC107685644,LOC107727836 coding downstream 3743 16520544 ~ 16556758 (-)
LOC103029523 iqsec1b,iqsec1,LOC108424663,LOC107691341,LOC107551128 coding downstream 422208 15869135 ~ 16138293 (-)
LOC103030277 LOC108415871 coding downstream 709310 15846861 ~ 15851191 (-)
LOC103047460 NA coding downstream 726780 15832088 ~ 15833721 (-)
LOC103030908 LOC103362890,LOC104939527,LOC101063010 coding downstream 735262 15814220 ~ 15825239 (-)
phf2 phf2 coding upstream 173282 16739287 ~ 16794230 (-)
fam120a fam120a,LOC107685640,LOC107691381 coding upstream 230863 16796868 ~ 16827437 (-)
cstf1 cstf1 coding upstream 309403 16875408 ~ 16884596 (-)
LOC103036783 NA coding upstream 320706 16886711 ~ 16954694 (-)
LOC103037092 ece1,LOC107727859,LOC107691323,LOC108255065,LOC107749422,LOC106582992 coding upstream 400211 16966216 ~ 17007699 (-)
G190421 NA non-coding downstream 7289 16516760 ~ 16553212 (-)
G190416 NA non-coding downstream 74964 16456537 ~ 16485537 (-)
LOC111195386 NA non-coding downstream 162472 16304718 ~ 16398029 (-)
G190400 NA non-coding downstream 232320 16309267 ~ 16328181 (-)
G190401 NA non-coding downstream 240107 16302886 ~ 16320394 (-)
G190430 NA non-coding upstream 92216 16658221 ~ 16658494 (-)
G190433 NA non-coding upstream 120151 16686156 ~ 16686622 (-)
G190434 NA non-coding upstream 125824 16691829 ~ 16748387 (-)
G190435 NA non-coding upstream 139873 16705878 ~ 16722660 (-)
G190444 NA non-coding upstream 226875 16792880 ~ 16793587 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other downstream 99573 16345701 ~ 16460928 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other downstream 1093917 15409207 ~ 15466584 (-)
LOC103024926 dynlrb1,LOC106565026 other downstream 1238326 15318643 ~ 15322175 (-)
tsen2 NA other downstream 3483759 13062799 ~ 13076742 (-)
G189335 psma5,LOC107685984 other downstream 3940935 12614912 ~ 12619566 (-)
ptpdc1 NA other upstream 3618 16569623 ~ 16599317 (-)
cass4 NA other upstream 267845 16833850 ~ 16869461 (-)
irf6 irf6,LOC107599105,LOC106565674 other upstream 615109 17181114 ~ 17193747 (-)
G190788 NA other upstream 651316 17217321 ~ 17219780 (-)
mrpl20 mrpl20 other upstream 1573358 18139363 ~ 18213530 (-)

Expression


Co-expression Network