LOC111195391


Basic Information

Item Value
gene id LOC111195391
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17236581 ~ 17238451 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651615.1
CCtgcaccagcacacacacacacacacacacacacacacacacacgcacacacacacaccagtataAACCTCACAGAGGGAAAGTGAGGGACAGTGTGGAGAGAGCTGTTCAGACAGGACGGTGGTTATGATGCTGATGGACAGTAGAGTGCTGGTGCCGCTGGCCCGGGAGCTGCTGTCTCTGAGGTTCAGGCCGGGGTTGCTGAGGGTTTACCTGGTGGGCTCAGTGTTGGCTCTGCTGGGGGTCGTGGTGGGCGTGGCCGACATGCTGCGTTTGACCTTCTGCACTGAGGACGTCCAGACTGGACCAGAGGAACAGTACGAGGAGCTGCTCGCAACCCTGCGggagatcacacacacacactcacacactctcacacacacacacacactcacagacacacactctcacacagacacacacacttacagtgaACTGAGGCCCTCACTGCATTTTGAGGAGGAGAGAGGGCCCTTAACCTACAGGAGACCCCTGGAACACACACTCCCCCCATACATCCATCATATGTAGCATCTTCTCAGCTCACTGAGaacatttatcaacattttaaaaaggttccatTAACGTTAAACTGTAACATTGCAGTGACGTTACcatgatgtttaaaaatgttaagtaaaaACACTCTAAGAACATCCTGAAAATGTAAGAACATTAACCGTCAAGatcagaaaatgttctattaAGCAAAAACTGTTCCATGCATTAAAGTGTAGCGATGGATGTGTGTAACTTATTGATCTACtgtttcccagaatgcactgcaAATCAAATCAGCTGatgttctgtgtttaatactagatggcagctgtgtgtgtgtgtatttgctattcttacattatatattttttgtatctatAATTGTAAGTGTAAattttgtaaatgtatattcattattatttagattttatttgtattttataattttaaaactgttcacatgaaaaataaacaacCTCAAACAAccttaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651615.1 True 993 lncRNA 0.44 2 17236581 17238451

Neighbor

gene id symbol gene type direction distance location
wdr77 wdr77 coding downstream 1643 17225678 ~ 17234938 (-)
LOC111195389 NA coding downstream 57768 17162816 ~ 17178813 (-)
LOC103038379 LOC107662820,LOC103362894 coding downstream 77926 17131341 ~ 17158655 (-)
strip1 strip1,LOC106565664 coding downstream 112960 17110671 ~ 17123621 (-)
LOC103037092 ece1,LOC107727859,LOC107691323,LOC108255065,LOC107749422,LOC106582992 coding downstream 228882 16966216 ~ 17007699 (-)
LOC111195392 LOC108414075 coding upstream 28789 17267240 ~ 17285794 (-)
LOC103026358 LOC105900309,LOC100136526 coding upstream 70960 17309411 ~ 17336942 (-)
LOC103036700 LOC108415149 coding upstream 104549 17343000 ~ 17356073 (-)
LOC103035786 stk38,LOC105900354,LOC105016867,LOC107667630,LOC106583482 coding upstream 180601 17419052 ~ 17432774 (-)
LOC103035479 LOC108416666,LOC108416668 coding upstream 213566 17452017 ~ 17458184 (-)
G190785 NA non-coding downstream 82176 17153390 ~ 17154405 (-)
G190786 NA non-coding downstream 84742 17149468 ~ 17151839 (-)
G190783 NA non-coding downstream 105446 17125493 ~ 17131135 (-)
G190758 NA non-coding downstream 130913 17020911 ~ 17105668 (-)
G190769 alpl non-coding downstream 180459 17053147 ~ 17056122 (-)
G190827 NA non-coding upstream 11746 17250197 ~ 17251702 (-)
G190816 NA non-coding upstream 60493 17298944 ~ 17299699 (-)
G190818 NA non-coding upstream 176056 17414507 ~ 17415735 (-)
G190813 NA non-coding upstream 177508 17415959 ~ 17416966 (-)
G190810 NA non-coding upstream 187199 17425650 ~ 17513317 (-)
G190788 NA other downstream 16801 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 42834 17181114 ~ 17193747 (-)
cass4 NA other downstream 367120 16833850 ~ 16869461 (-)
ptpdc1 NA other downstream 637264 16569623 ~ 16599317 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other downstream 775653 16345701 ~ 16460928 (-)
mrpl20 mrpl20 other upstream 900912 18139363 ~ 18213530 (-)
LOC111195395 NA other upstream 928789 18167240 ~ 18176164 (-)
LOC103041510 LOC108414096 other upstream 1073001 18311452 ~ 18315337 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 1469868 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 1659058 18897509 ~ 18902285 (-)

Expression


Co-expression Network