LOC111195406


Basic Information

Item Value
gene id LOC111195406
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 21508052 ~ 21508261 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651627.1
GTATGAGCTGAGGTACGGGCCAAGTTTAAGCCGAGGTTCGGGCCGAGGTTTGGGCTGAGGTACAGCCAAGGTATGAGCTGAGGTTCAGGACAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651627.1 True 94 ncRNA 0.56 3 21508052 21508261

Neighbor

gene id symbol gene type direction distance location
itga7 itga7 coding downstream 9989 21442288 ~ 21498063 (-)
LOC103027815 LOC108424594,LOC106566152 coding downstream 79434 21412689 ~ 21428618 (-)
LOC103026802 NA coding downstream 159668 21342702 ~ 21348384 (-)
gpx1 gpx1a,LOC103031640,LOC108435306,LOC108255192,LOC107577558,LOC107718196,LOC103360354 coding downstream 393129 21112480 ~ 21114923 (-)
LOC103031955 NA coding downstream 410812 21093650 ~ 21097240 (-)
arfgap1 arfgap1 coding upstream 42494 21550755 ~ 21570651 (-)
LOC111195407 NA coding upstream 64106 21572367 ~ 21583063 (-)
LOC103033505 agap2 coding upstream 89866 21598127 ~ 21630334 (-)
cdk4 cdk4,LOC107747701,LOC106565448,LOC107701179,LOC107567936 coding upstream 138844 21647105 ~ 21663599 (-)
LOC103023479 tnnc1,LOC103023479,LOC108424583,LOC106571909,LOC103385538 coding upstream 497173 22005434 ~ 22012959 (-)
G191791 NA non-coding downstream 137273 21303518 ~ 21370779 (-)
G191787 NA non-coding downstream 228300 21279003 ~ 21279752 (-)
G191691 NA non-coding downstream 268530 21173472 ~ 21239522 (-)
G191664 NA non-coding downstream 401230 21105440 ~ 21106822 (-)
G191653 NA non-coding downstream 415817 21091820 ~ 21092235 (-)
G191812 NA non-coding upstream 17898 21526159 ~ 21528036 (-)
G191827 NA non-coding upstream 201655 21709916 ~ 21711285 (-)
G191858 NA non-coding upstream 324881 21833142 ~ 21833495 (-)
G191870 NA non-coding upstream 351865 21860126 ~ 21924848 (-)
G191880 NA non-coding upstream 449580 21957841 ~ 21958432 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other downstream 71599 21430016 ~ 21436453 (-)
brk1 brk1,BRK1,LOC106565571 other downstream 404834 21099347 ~ 21103218 (-)
LOC103036492 card19,LOC108443695 other downstream 1979472 19511321 ~ 19528580 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 2605767 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 2709137 18708319 ~ 18798915 (-)
elmo2 elmo2,LOC106583331 other upstream 2663 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 338708 21846969 ~ 21851642 (-)
alas1 alas1,LOC106583798 other upstream 841086 22349347 ~ 22362458 (-)
amhr2 NA other upstream 1201288 22709549 ~ 22722905 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other upstream 1277902 22786163 ~ 22803642 (-)

Expression


Co-expression Network