LOC111195426


Basic Information

Item Value
gene id LOC111195426
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 29227704 ~ 29232967 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651643.1
agctagttagctaggttgGCTAAATTAGCCTGGTAGGTTCAGTATAAAACTAGTTAAAGGTCTCACACTAAACATCACACCATGGCTgatcagctagctagctaacgctaaatCTGAGGTGGATGTCCACACTActtgtgagtctgtgtgtgtttttctgaccctcctgtggcaaaaaaaaagccCATCCCACATACCCCAGCATTCACACGGCCCATTGTTCTGCATGTGTCGGCCGGCAGCAGCAGGACCATCACTTACTCCAGGCTCTCCTCTGATGGGTGTCCAAAGCTGCAGGTGGGGCTATCAGGCCCCAGCATTTGGTTCTCATCTGGGTTCCCTAAACAGGCCTCATGATAAAGCGAGCTAAATAGAACTGTCTGGAACATAGCAGGTTCCCCTCATCAACCTCCTCTTTGCAGGGCAGGGTGGGCGCGGCAGGTGGTGCAGGCACAGGTGTTAAGGCCAGACAGACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651643.1 True 476 lncRNA 0.51 3 29227704 29232967

Neighbor

gene id symbol gene type direction distance location
LOC103040895 LOC108436021 coding downstream 8696 29177346 ~ 29219008 (-)
LOC103042433 taf4,LOC108436032 coding downstream 54209 29151721 ~ 29173495 (-)
LOC103046446 LOC108436063,LOC107728611,LOC107656039,LOC107600301 coding downstream 656762 28546579 ~ 28570942 (-)
LOC103043100 ncoa3,LOC108436109,LOC108255004,LOC107717960 coding downstream 720148 28459080 ~ 28507556 (-)
LOC103024327 NA coding downstream 898416 28323355 ~ 28329288 (-)
LOC103042113 LOC103042113,LOC108435091 coding upstream 545 29233512 ~ 29254829 (-)
LOC103040276 NA coding upstream 36954 29269921 ~ 29278564 (-)
cse1l cse1l,LOC107750990,LOC107699361 coding upstream 47183 29280150 ~ 29291603 (-)
ptprg ptprg,ptprga,LOC107752167,LOC106583020 coding upstream 69567 29302534 ~ 29759625 (-)
LOC103043315 NA coding upstream 1486009 30718976 ~ 30720245 (-)
G193638 NA non-coding downstream 50839 29176455 ~ 29176865 (-)
G193637 NA non-coding downstream 51580 29175914 ~ 29176124 (-)
G193568 NA non-coding downstream 296783 28875917 ~ 28930921 (-)
G193540 NA non-coding downstream 631697 28595651 ~ 28596007 (-)
G193477 NA non-coding downstream 758096 28395697 ~ 28469608 (-)
G193642 NA non-coding upstream 31007 29263974 ~ 29266389 (-)
G193649 NA non-coding upstream 63834 29296801 ~ 29297084 (-)
G193652 NA non-coding upstream 146780 29379747 ~ 29380489 (-)
G193662 NA non-coding upstream 351485 29584452 ~ 29584846 (-)
G193678 NA non-coding upstream 499605 29732572 ~ 29733272 (-)
G193541 NA other downstream 629066 28597555 ~ 28598638 (-)
LOC111195343 LOC108434908 other downstream 641482 28576107 ~ 28586222 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other downstream 1014634 28194379 ~ 28213070 (-)
tmem167b tmem167b other downstream 1212092 28010991 ~ 28015612 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other downstream 1526373 27425042 ~ 27701331 (-)
G193737 NA other upstream 932794 30165761 ~ 30180126 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other upstream 1576827 30809794 ~ 30830957 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other upstream 1937331 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other upstream 1941840 31174807 ~ 31174878 (-)
cadps cadps,LOC107549847 other upstream 2217836 31450803 ~ 31654210 (-)

Expression


Co-expression Network