LOC103041000


Basic Information

Item Value
gene id LOC103041000
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 107081 ~ 109174 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651649.1
ttagctattaatggaaattaaatgatttagcGTTTAGTGGCTCTGTAACAGTGTGAATAGAGGTCCAGTGTTTTATAAATAACAGTATATTCCTGCAGCAGCGCCGGACCCTGACTTTTCTTCTATATCGGGAGCCACACTTTACCCCCTTTCCACATACAAGGTCACAGAGCTCAAGGTTAAACCCTCTGGGGCCGGTGTGTAAAACGAGGCCAATCCTCATACACTCAATTACTGCTCGACACCATGATGGAAATGTTGCCCTGGCATCCTTAATAAGCTGAAAATAGGTCTGTTATTTTAGCGCTTTATCTGGAAAGTTCACCGTAACACCTGCCATTCGGTACATCAACAGATCTGGACTTCGCTTCACGAATGTGCGACATGAGGGCAGAGATCTGCGAGACGCCACGTTTTCTGCTGCCTTTTACTGAGCGTTTCACAAAGAAATCGCAAGTTTGAtctctaatattattattattattaatatacatgtGATCTGTGACTTATTCTGGATTTGCACAAGCCTCTGCATAATCAACACAAACCCCATGTTTGCACTGAAACCCCGGATTTAAGGAATACTCCGTCCCCTCCCAGAAactttcccagcagtgtttaatgCTGATATAAAAAGCAGCAGCTTAGCTTTGATCGGAGCTGAAAGTACAGCTTGTCTTTTGTGTTTAACTCAACGTCCGGAGCGCTGGATCATTCCTGCCCTCTCTGCTCTCCTCCCGCCATGCTGGACTTCATAATAAACTGCACTCGCTCCGGCTGAACTGATCAACCGCTAAGTGGCTCTGGAAGGATATAAATGTCCCTGTGGGTAAAAAGTGCTCTGGAAACTGCTGGAGTTCAGATGACAGAAGATTATTGGAGAAAAAACCCACAGTAAAACAGAAGATGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651649.1 True 910 lncRNA 0.44 3 107081 109174

Neighbor

gene id symbol gene type direction distance location
LOC103021578 ephb2,ephb2b,LOC108439490,LOC107685632,LOC102781222 coding upstream 16765 33445 ~ 90316 (+)
LOC111195433 NA coding upstream 78323 22078 ~ 28758 (+)
LOC111195432 NA coding upstream 86276 17629 ~ 20805 (+)
LOC111195347 NA coding upstream 91403 2210 ~ 15678 (+)
fam83d NA coding downstream 6338 115512 ~ 120431 (+)
LOC103041710 LOC103041710,LOC108440336 coding downstream 12416 121590 ~ 127184 (+)
LOC103042533 LOC103042533 coding downstream 32767 141941 ~ 145972 (+)
LOC103043370 LOC103043370,LOC108440332 coding downstream 39142 148316 ~ 152658 (+)
LOC103042837 LOC108440330,LOC108440331 coding downstream 47998 157172 ~ 159544 (+)
G186215 NA non-coding upstream 3217 26289 ~ 103864 (+)
G186227 NA non-coding upstream 8742 74730 ~ 98339 (+)
G186230 NA non-coding upstream 22213 77642 ~ 84868 (+)
G186214 NA non-coding upstream 79961 24507 ~ 27120 (+)
G186211 NA non-coding upstream 83150 17550 ~ 23931 (+)
LOC111195451 NA non-coding downstream 4216 113390 ~ 114346 (+)
G186241 NA non-coding downstream 68720 177894 ~ 178778 (+)
G186264 NA non-coding downstream 111942 221116 ~ 254030 (+)
G186279 NA non-coding downstream 184281 293455 ~ 294062 (+)
G186368 NA non-coding downstream 204786 313960 ~ 340818 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other downstream 401401 510575 ~ 538216 (+)
podxl2 NA other downstream 497659 606833 ~ 1095337 (+)
G186880 lmcd1 other downstream 2871323 2980497 ~ 3002015 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other downstream 3283213 3392387 ~ 3394843 (+)
p3h1 NA other downstream 5670717 5779891 ~ 5798979 (+)

Expression


Co-expression Network