G74130


Basic Information

Item Value
gene id G74130
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7334138 ~ 7338185 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU84545
AGAAGGTGTACTCTCCATGTGAGGTGAAATTGGTCTGTGGAAACTAGGACTTTTCTTTTTATGATTTTCTGAATGTATAGACAAAACAGCCGAAACATGAGATTTGGGGGGCTCTTATTTTGGAATACAACATCAGAATGTCCTAAAACGGTGTGATTGACACTGAGAAGGTGTACTCTCCATCTGAGGCCTCACGGAGCCATCGGATTTAAATAAAAATATCTCAATTTGCGTTCCGAAGATGAACGAAGGTCTTATGGGTGTGGAACGGTGTGAGGACTTGTTGCGCTTTGTGTGTTCATTTGGCCTGCTCTGGGAGTAACGTTAAACGACAGGCGACTGCTGTGCGAGGATGCGCAATCTTCTCAGCTTCTTCAGAAGAGAGGGACAAAATGATTTATGAACTCAAACCAACTATGGAGAGGAGCCCTTCTCCTTGGTCTTCCTTTCTTAAAGGAATAGTTCACACAAAAATAAAAATTGTCACCATTTACCCAACCTCATGTCTTTAATAAGACTTTTGTCCATCTATGGAAGACAAATGAAGATATTTTTAATATTGTCATCTTTTTTATTCATTTATTTGTATCCATTTACAGTCTAGATAAGTATTTTTAAGCTTCACAAATGCAGTTATTGTAGTAATCCATACCAATATTTATATATGAATAAAATCCTTAATTATATCTGTTTATATCATTATAAAGCAATCATGTCTGTTCAGAAAATTAAAAAATTTTGGACTCCCAGATTTGCAATGGATGGACAAAAAATTGAGAGAATATTAAAAATATCTTCATTTGTGTTTCAAAGATTAGCAAAAGTCTTATGGTTTTGGAAGGACATGAGGGAGAGTAAATTATGACAGTTTTCTTTTTTGGGTGAACTAATACTTTAAAGAGCAGCCCTCCAAGTTCATCAAAATGTGTGAGGTGATGACAGGGATGATACTGGTCAAAAAGGAGAATGACCTTCCCCAATGAAGATCACTGATGTGACAGTGCTTTTAAAGGAGAAGATTGTCCTGGACAATTTAAAGGATGTTGCATGCCTTTGCTGTGCTGATGGAGCTTCATGACTGGACATCAGTTATCCTAAGGAGGTCATGAAAATTGGCCGTGATGCGTGTTCTGTACGTATTCATGGACTTAATGAACTTTTAGCATATAATCTGACAAATGTTCGATGCTTGTTCATTGTTGTTTAGTGGAGGAATTCACACTCTCATTCAAACTCACATTCTTTCACATGTATACCTGCCTTATGCTGCGTTCACACCGAATGTGAATCGCGCGTCAAATTCGCGTTGGACGCTTGAACATTTTGAAGTCAGACACTTCAGACACGCGTCAAATTCGCTCTATTCACACGTCTAAACAAAGTGTGTTCAGACGCGAATTCACGTCATGGGAGGGGCTTCTGCCTGGCGTGCTACCCAGTGTATTTGCCGGCCTCCTTGCCAGATAATGGCGGATATGGATGCTGCTGAGTAGTAGCGGCAATTTAGCTCAGTTATGCTGGCCAGCTTTTGCTAGCTAGCAGGTGGGCTAGTATCAATGGCTAAAATCATGCAAAGCGTTTTACAACTTACCAGATTGTCCGATTTTCTCGCTTATCCTCTTCCAGGCAAGGTCCTTTTTATTCCTGTCTCGATAAAAATATGATGACACATCATAGAGCTCAGGGTGGCCACACACAGCGACTATTAATTTGTCCTCCATCTTTGTTCTAGTCTCCACTGCTGATCACATCATAAACACGTGACTACCAAAGCAGAGTCCCTGATTGGTTAACGCGCCGCGAATATTCGCCAAAGTTCAGATTTTTCAACTCTGGCGTCTAGGGCGTCAGACGCTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU84545 True 1857 lncRNA 0.40 5 7334138 7338185

Neighbor

gene id symbol gene type direction distance location
CI01000012_07322669_07329009 NA coding downstream 4626 7322633 ~ 7329512 (-)
CI01000012_07316139_07320354 NA coding downstream 12945 7314756 ~ 7321193 (-)
CI01000012_07268516_07270856 NA coding downstream 63282 7268488 ~ 7270856 (-)
CI01000012_07210006_07251043 NA coding downstream 83095 7209595 ~ 7251043 (-)
CI01000012_07164949_07166936 NA coding downstream 167202 7164839 ~ 7166936 (-)
CI01000012_07356934_07358497 NA coding upstream 18678 7356863 ~ 7358612 (-)
CI01000012_07366635_07367888 NA coding upstream 28295 7366480 ~ 7367888 (-)
CI01000012_07368295_07372257 NA coding upstream 30110 7368295 ~ 7372257 (-)
CI01000012_07374223_07375676 IQCC coding upstream 35862 7374047 ~ 7375676 (-)
CI01000012_07379927_07381734 CCDC28B coding upstream 40349 7378534 ~ 7381734 (-)
G74137 NA non-coding downstream 65863 7266989 ~ 7268275 (-)
G74296 NA non-coding downstream 70113 7263770 ~ 7264025 (-)
G74294 NA non-coding downstream 74051 7259787 ~ 7260087 (-)
G74289 NA non-coding downstream 83443 7250463 ~ 7250695 (-)
G74113 NA non-coding upstream 7296 7345481 ~ 7345784 (-)
G74363 NA non-coding upstream 225537 7563722 ~ 7563999 (-)
G74376 NA non-coding upstream 259728 7597913 ~ 7598119 (-)
G74378 NA non-coding upstream 262956 7601141 ~ 7601382 (-)
G74381 NA non-coding upstream 355191 7693376 ~ 7694697 (-)
G72629 NA other downstream 1186644 6147011 ~ 6147494 (-)
G72294 NA other downstream 1868281 5462840 ~ 5465857 (-)
CI01000012_05414096_05416676 TTC9 other downstream 1917358 5413369 ~ 5416780 (-)
G72204 NA other downstream 2031932 5293773 ~ 5302206 (-)
G72068 NA other downstream 2554006 4776220 ~ 4780132 (-)
G74648 NA other upstream 926144 8264329 ~ 8265654 (-)
G74701 NA other upstream 1028834 8367019 ~ 8367643 (-)
CI01000012_09068458_09070536 NA other upstream 1729721 9067906 ~ 9070765 (-)
CI01000012_09071892_09073410 NA other upstream 1733186 9071371 ~ 9073457 (-)

Expression


Co-expression Network