LOC111195458


Basic Information

Item Value
gene id LOC111195458
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 20148618 ~ 20153059 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651656.1
aaaaacaatgtaaatagaACAAATTAATTTCTTCTGGATTCATAGAGTACAGAAAATGTGACCCATTAGCGGAAAGTAGTTAACAATTTGACTAAAACCAGAGAcgttattaatgaggagacaggccactGACTGCTGTATGAACGGGATTTCTTGTAATGTTAACCATGGAGCCTGATAATAGATAAAGTCCTGtccttcaacaaaaagagccaaaaaGCTTGCTGGTGGGGAGGCCCCCCCTCgttgtggagatctgtgcaggcacagtagccataacaagttgaaaatcatgtttttttgtgcattaataTGGGACAGAAGCACCCAGCTTGGTAaaaggagagagacaggaggtaacatagacacaagtGCATACTAAAGCACTGGCATCCATTCATTCCAccatccacaaacctgagttATTGTGTGGAAATTGATGGTACTGCATCATCAGCATCTTATGCTAGTTGTTATGCTGTAAGTAAatactaaacattaaaaaagtgtcTGTGTTTGAAGTTAGAGTACAGCGATTGATtgagtaatttaattaaaagtgtttgtgtgtgtggacagcGGTTCCTCGGGTGGTAACGATGCTGATGGCGGTGTGAAATCCTGAACCCTGGTTAGTTGTCTTTCTGACTGTAACATGAGCTCTAGTATTGGTCGCAGTGATACTGCTGGATACTTGGAATATCTTAACAAGgagtcactagatggcagcaTCAGCCTGTATGAAGTAGATCTTCACAAAGACGTCATGTGTTTGATCGGAGTTACCTGTTGTAACTCAGCGACAGGTGAGCACCGCTGGCTGGATGAAGTGGCTTCCTCTTCCTCACCTGCTGATACACAGGTCTGACCCAGTCACCCTGAACCGGCTCGAAATCA
>XR_002651657.1
aaaaacaatgtaaatagaACAAATTAATTTCTTCTGGATTCATAGAGTACAGAAAATGTGACCCATTAGCGGAAAGTAGTTAACAATTTGACTAAAACCAGAGAcgttattaatgaggagacaggccactGACTGCTGTATGAACGGGATTTCTTGTAATGTTAACCATGGAGCCTGATAATAGATAAAGTCCTGtccttcaacaaaaagagccaaaaaGCTTGCTGGTGGGGAGGCCCCCCCTCgttgtggagatctgtgcaggcacagtagccataacaagttgaaaatcatgtttttttgtgcattaataTGGGACAGAAGCACCCAGCTTGGTAaaaggagagagacaggaggtaacatagacacaagtGCATACTAAAGCACTGGCATCCATTCATTCCAccatccacaaacctgagttATTGTGTGGAAATTGATGGTACTGCATCATCAGCATCTTATGCTAGTTGTTATGCTcGGTTCCTCGGGTGGTAACGATGCTGATGGCGGTGTGAAATCCTGAACCCTGGTTAGTTGTCTTTCTGACTGTAACATGAGCTCTAGTATTGGTCGCAGTGATACTGCTGGATACTTGGAATATCTTAACAAGgagtcactagatggcagcaTCAGCCTGTATGAAGTAGATCTTCACAAAGACGTCATGTGTTTGATCGGAGTTACCTGTTGTAACTCAGCGACAGGTGAGCACCGCTGGCTGGATGAAGTGGCTTCCTCTTCCTCACCTGCTGATACACAGGTCTGACCCAGTCACCCTGAACCGGCTCGAAATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651656.1 True 897 lncRNA 0.43 3 20148618 20153059
XR_002651657.1 False 798 lncRNA 0.44 4 20148618 20153059

Neighbor

gene id symbol gene type direction distance location
LOC103042725 LOC103042725 coding downstream 231157 19912875 ~ 19917461 (-)
LOC111195449 NA coding downstream 257510 19887079 ~ 19891108 (-)
LOC103043652 LOC108440521 coding downstream 356154 19785574 ~ 19792464 (-)
LOC103035977 tkta,LOC108443693,LOC107578334,LOC107582382,LOC107743250,LOC107694867 coding downstream 544597 19575698 ~ 19604021 (-)
LOC103037097 LOC108443694,LOC107743251,LOC107694868,LOC107578651,LOC107696460 coding downstream 584442 19534667 ~ 19564176 (-)
traip traip coding upstream 90666 20243725 ~ 20253893 (-)
LOC103041184 LOC107715794,LOC107659533,LOC107575741,LOC107685972 coding upstream 349249 20502308 ~ 20622494 (-)
LOC103032600 arl8b,LOC103032600,LOC107095653,LOC108435203,LOC105934196,LOC108255114,LOC107385792,LOC103386496 coding upstream 642354 20795413 ~ 20807451 (-)
bhlhe40 bhlhe40 coding upstream 663538 20816597 ~ 20821524 (-)
itpr1 itpr1 coding upstream 684059 20837118 ~ 21072418 (-)
G191491 gnai2,LOC105909893,LOC103358732,LOC101079922,LOC104930488,LOC103465228,LOC102228806,LOC104958439 non-coding downstream 1995 20069689 ~ 20146623 (-)
G191484 NA non-coding downstream 80347 20010478 ~ 20068271 (-)
LOC111195457 NA non-coding downstream 261934 19880925 ~ 19886684 (-)
G191429 NA non-coding downstream 284606 19810655 ~ 19864012 (-)
G191419 NA non-coding downstream 362267 19786115 ~ 19786351 (-)
G191507 NA non-coding upstream 28828 20181887 ~ 20243173 (-)
G191518 NA non-coding upstream 116562 20269621 ~ 20271923 (-)
G191557 NA non-coding upstream 340251 20493310 ~ 20525681 (-)
G191647 NA non-coding upstream 803930 20956989 ~ 20957556 (-)
G191653 NA non-coding upstream 938761 21091820 ~ 21092235 (-)
LOC103036492 card19,LOC108443695 other downstream 620038 19511321 ~ 19528580 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 1246333 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 1349703 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 1833281 18311452 ~ 18315337 (-)
LOC111195395 NA other downstream 1972454 18167240 ~ 18176164 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 946288 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 1276957 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 1357865 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 1693910 21846969 ~ 21851642 (-)
alas1 alas1,LOC106583798 other upstream 2196288 22349347 ~ 22362458 (-)

Expression


Co-expression Network