LOC111195460


Basic Information

Item Value
gene id LOC111195460
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 23098838 ~ 23100988 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651658.1
TCCCGGAAGTTAGCAGCAAATACTATCAGCACAGTGAAGCTGGAGCAGGATACACCATGTGTGGTCCACTTTTACAGGGTTCATTCTTCCGAACTACACAAGTAAACCCCATTTTATGTAATCTGTGCTGAttctttggtttatttacatgtgcaatgtactattttcctttagttgatttacatgtgttctgtactttgtttttctgtatgtagCCTCTCTATATTCTGATATCAGTCTTTAAAGTTATATATCATCTCatgtttgttgtaaaaataataaagctgttGCAAATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651658.1 True 297 lncRNA 0.35 2 23098838 23100988

Neighbor

gene id symbol gene type direction distance location
rnpep rnpep coding downstream 274 23087526 ~ 23098564 (-)
LOC103045443 LOC108410710,LOC107727873,LOC107560790,LOC107685706,LOC107749489 coding downstream 16710 23074119 ~ 23082128 (-)
LOC103044418 adipor1 coding downstream 26636 23063167 ~ 23072202 (-)
rabif rabif,LOC107601129,LOC107581890,LOC107749491 coding downstream 62046 23033475 ~ 23036792 (-)
LOC103025998 kdm5b,LOC107600688,LOC107685701,LOC107561016,LOC107749493 coding downstream 70237 22996094 ~ 23028601 (-)
c22h1orf106 LOC108410711,LOC107727857,LOC107655074 coding upstream 3266 23104254 ~ 23144408 (-)
LOC103045076 gpr25 coding upstream 58680 23159668 ~ 23162419 (-)
LOC103047010 syt6,LOC107727826,LOC107560238,LOC107655078 coding upstream 107897 23208885 ~ 23282019 (-)
nfs1 nfs1,LOC107601922,LOC107559867 coding upstream 508265 23609253 ~ 23622118 (-)
LOC103042624 rbm39,LOC107655082,LOC107727761,LOC107602070 coding upstream 523922 23624910 ~ 23635826 (-)
G192240 NA non-coding downstream 67768 23030652 ~ 23031070 (-)
G192232 NA non-coding downstream 136029 22961247 ~ 22962809 (-)
G192237 NA non-coding downstream 147512 22951007 ~ 22951326 (-)
G192235 NA non-coding downstream 159684 22938921 ~ 22939154 (-)
G192145 NA non-coding downstream 362596 22735091 ~ 22736242 (-)
G192288 NA non-coding upstream 4120 23105108 ~ 23105627 (-)
G192293 NA non-coding upstream 53594 23154582 ~ 23155042 (-)
G192335 NA non-coding upstream 114602 23215590 ~ 23223369 (-)
G192336 NA non-coding upstream 115188 23216176 ~ 23224603 (-)
G192365 NA non-coding upstream 228086 23329074 ~ 23329313 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 40033 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 295196 22786163 ~ 22803642 (-)
amhr2 NA other downstream 375933 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 736380 22349347 ~ 22362458 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 1247196 21846969 ~ 21851642 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 938258 24039246 ~ 24105898 (-)
G192815 mdm4 other upstream 2110687 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 2773922 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 3610265 26711253 ~ 26724106 (-)
G193097 NA other upstream 3930675 27031663 ~ 27033089 (-)

Expression


Co-expression Network