G73262


Basic Information

Item Value
gene id G73262
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7420693 ~ 7421889 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU83526
GGATGTCCTGATGTCCAGCAGGAAAGCAGTGTGTAATTTGCCTTACCATTTAAAATGGGGTTGGTTTTTTATATATACACACACACAGTGGGTACGGAAAGTATTCAGACCCCCTTAAATTTTTCACTCTTTGTTATATTGCAGCCATTTGGTAAAATCATTTAAGTTCATTTTTTTTCCTCATTAATGTACACACAGCACCCCATATTGACAGAAAAACACAGAATTGTTGACATTTTTGCAGATTTANNNNNNNNNNAGAAATGAAATATCACATGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU83526 True 279 lncRNA 0.34 2 7420693 7421889

Neighbor

gene id symbol gene type direction distance location
CI01000012_07401962_07405598 NUSAP1 coding upstream 15095 7401962 ~ 7405598 (+)
CI01000012_07359292_07362314 NA coding upstream 58315 7358715 ~ 7362378 (+)
CI01000012_07348648_07352865 NA coding upstream 67484 7348648 ~ 7353209 (+)
CI01000012_07312430_07315865 BTBD6A coding upstream 104776 7311672 ~ 7315917 (+)
CI01000012_07136101_07161117 RRBP1A, RRBP1 coding upstream 259145 7136017 ~ 7161548 (+)
CI01000012_07429147_07434790 GOLGA5 coding downstream 7258 7429147 ~ 7434846 (+)
CI01000012_07441851_07459661 TRIP11 coding downstream 19962 7441851 ~ 7459786 (+)
CI01000012_07464278_07478699 FBLN5 coding downstream 42389 7464278 ~ 7478992 (+)
CI01000012_07480048_07492395 NA coding downstream 58159 7480048 ~ 7492766 (+)
CI01000012_07497278_07501713 PLEK2 coding downstream 75341 7497230 ~ 7502298 (+)
G73162 NA non-coding upstream 20416 7395368 ~ 7400277 (+)
G73258 NA non-coding upstream 47879 7372589 ~ 7372814 (+)
G73257 NA non-coding upstream 48285 7372072 ~ 7372408 (+)
G73255 NA non-coding upstream 72791 7347650 ~ 7347902 (+)
G73181 NA non-coding upstream 74912 7345506 ~ 7345781 (+)
G73175 NA non-coding downstream 285786 7707675 ~ 7715446 (+)
G73321 NA non-coding downstream 312407 7734296 ~ 7734698 (+)
G73346 NA non-coding downstream 380032 7801921 ~ 7802123 (+)
G73359 NA non-coding downstream 433454 7855343 ~ 7855654 (+)
G73363 NA non-coding downstream 447509 7869398 ~ 7869602 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 1496388 5922385 ~ 5929186 (+)
G71623 NA other upstream 1604088 5813517 ~ 5816605 (+)
G71548 NA other upstream 1859260 5550493 ~ 5561433 (+)
G71221 NA other upstream 1880237 5538525 ~ 5540456 (+)
G71218 NA other upstream 1882309 5535852 ~ 5538384 (+)
CI01000012_07806089_07811902 BEND3 other downstream 384214 7805248 ~ 7811902 (+)
G73578 NA other downstream 944917 8366806 ~ 8367627 (+)
CI01000012_10223957_10235955 NA other downstream 2800066 10223697 ~ 10236276 (+)
G75533 NA other downstream 3722928 11144817 ~ 11145739 (+)
G76385 NA other downstream 5208866 12630755 ~ 12675666 (+)

Expression


Co-expression Network