Gene
RNA
| Item | Value |
|---|---|
| gene id | G73578 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 8366806 ~ 8367627 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU83914 | False | 822 | TUCP | 0.45 | 1 | 8366806 | 8367627 |
| TU83912 | False | 624 | TUCP | 0.47 | 1 | 8367004 | 8367627 |
| TU83911 | True | 551 | TUCP | 0.48 | 1 | 8367077 | 8367627 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_08353036_08355661 | NA | coding | upstream | 9391 | 8350829 ~ 8357504 (+) |
| CI01000012_08312903_08334243 | SYT14A, SYT14 | coding | upstream | 31950 | 8312903 ~ 8334856 (+) |
| CI01000012_08307719_08308987 | NA | coding | upstream | 57585 | 8307719 ~ 8309221 (+) |
| CI01000012_08264407_08270366 | DIEXF | coding | upstream | 95978 | 8264002 ~ 8270828 (+) |
| CI01000012_08234924_08239665 | NA | coding | upstream | 126921 | 8234759 ~ 8239885 (+) |
| CI01000012_08433577_08437269 | TRMT5 | coding | downstream | 65950 | 8433577 ~ 8437972 (+) |
| CI01000012_08464015_08470633 | NA | coding | downstream | 96388 | 8464015 ~ 8470764 (+) |
| CI01000012_08479030_08480715 | MGC130961, SIX1B, SIX1, SIX2, SIX1A | coding | downstream | 109489 | 8477116 ~ 8481200 (+) |
| CI01000012_08526824_08531821 | DHRS7 | coding | downstream | 159197 | 8526824 ~ 8532163 (+) |
| CI01000012_08574591_08601981 | RTN1, RTN1A | coding | downstream | 206964 | 8574591 ~ 8601998 (+) |
| G73576 | NA | non-coding | upstream | 881 | 8365603 ~ 8365925 (+) |
| G73571 | NA | non-coding | upstream | 89223 | 8277395 ~ 8277583 (+) |
| G73537 | NA | non-coding | upstream | 163639 | 8202862 ~ 8203167 (+) |
| G73522 | NA | non-coding | upstream | 213617 | 8152928 ~ 8153189 (+) |
| G73579 | NA | non-coding | downstream | 995 | 8368622 ~ 8369011 (+) |
| G73583 | NA | non-coding | downstream | 6400 | 8374027 ~ 8374232 (+) |
| G73585 | NA | non-coding | downstream | 18660 | 8386287 ~ 8391810 (+) |
| G73591 | NA | non-coding | downstream | 25954 | 8393581 ~ 8393812 (+) |
| G73592 | NA | non-coding | downstream | 27439 | 8395066 ~ 8395284 (+) |
| CI01000012_07806089_07811902 | BEND3 | other | upstream | 558951 | 7805248 ~ 7811902 (+) |
| CI01000012_05923216_05928055 | SRD5A2B | other | upstream | 2442501 | 5922385 ~ 5929186 (+) |
| G71623 | NA | other | upstream | 2550201 | 5813517 ~ 5816605 (+) |
| G71548 | NA | other | upstream | 2805373 | 5550493 ~ 5561433 (+) |
| G71221 | NA | other | upstream | 2826350 | 5538525 ~ 5540456 (+) |
| CI01000012_10223957_10235955 | NA | other | downstream | 1854328 | 10223697 ~ 10236276 (+) |
| G75533 | NA | other | downstream | 2777190 | 11144817 ~ 11145739 (+) |
| G76385 | NA | other | downstream | 4263128 | 12630755 ~ 12675666 (+) |
| G76374 | NA | other | downstream | 4377904 | 12745531 ~ 12749169 (+) |
| CI01000012_13029637_13033226 | RGS17 | other | downstream | 4647879 | 13029435 ~ 13038899 (+) |
