Gene
RNA
| Item | Value |
|---|---|
| gene id | G73744 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 8748642 ~ 8749055 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU84126 | False | 352 | lncRNA | 0.46 | 1 | 8748642 | 8748993 |
| TU84124 | False | 319 | lncRNA | 0.50 | 1 | 8748737 | 8749055 |
| TU84125 | True | 257 | lncRNA | 0.51 | 1 | 8748737 | 8748993 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_08706061_08708565 | PRDM8 | coding | upstream | 39386 | 8705916 ~ 8709256 (+) |
| CI01000012_08656797_08670009 | RRP12 | coding | upstream | 78400 | 8656323 ~ 8670242 (+) |
| CI01000012_08643992_08646512 | UBTD1, UBTD1A, UBTD1B | coding | upstream | 102100 | 8643992 ~ 8646542 (+) |
| CI01000012_08635778_08639992 | ZDHHC16 | coding | upstream | 108074 | 8635778 ~ 8640568 (+) |
| CI01000012_08629488_08631884 | PGAM1A, PGAM1B, MGC82549, PGM, PGAM1 | coding | upstream | 116643 | 8629218 ~ 8631999 (+) |
| CI01000012_08787836_08798682 | MAPK8B, MAPK8A, MAPK8 | coding | downstream | 38781 | 8787836 ~ 8798682 (+) |
| CI01000012_08852654_08899169 | WDFY4 | coding | downstream | 103599 | 8852654 ~ 8899169 (+) |
| CI01000012_08926039_08935452 | NA | coding | downstream | 175993 | 8925048 ~ 8935861 (+) |
| CI01000012_09059209_09062816 | TMEM72 | coding | downstream | 310154 | 9059209 ~ 9062938 (+) |
| CI01000012_09074304_09074584 | NA | coding | downstream | 324491 | 9073546 ~ 9074642 (+) |
| G73743 | NA | non-coding | upstream | 1955 | 8745137 ~ 8746687 (+) |
| G73701 | NA | non-coding | upstream | 48134 | 8700211 ~ 8700508 (+) |
| G73686 | NA | non-coding | upstream | 97192 | 8651209 ~ 8651450 (+) |
| G73684 | NA | non-coding | upstream | 99805 | 8648604 ~ 8648837 (+) |
| G73671 | NA | non-coding | upstream | 188053 | 8560372 ~ 8560589 (+) |
| G73750 | NA | non-coding | downstream | 7067 | 8756122 ~ 8756791 (+) |
| G73752 | NA | non-coding | downstream | 10516 | 8759571 ~ 8759914 (+) |
| G73753 | NA | non-coding | downstream | 11284 | 8760339 ~ 8760560 (+) |
| G73754 | NA | non-coding | downstream | 13287 | 8762342 ~ 8762631 (+) |
| G73755 | NA | non-coding | downstream | 14283 | 8763338 ~ 8763746 (+) |
| G73578 | NA | other | upstream | 381015 | 8366806 ~ 8367627 (+) |
| CI01000012_07806089_07811902 | BEND3 | other | upstream | 940787 | 7805248 ~ 7811902 (+) |
| CI01000012_05923216_05928055 | SRD5A2B | other | upstream | 2824337 | 5922385 ~ 5929186 (+) |
| G71623 | NA | other | upstream | 2932037 | 5813517 ~ 5816605 (+) |
| G71548 | NA | other | upstream | 3187209 | 5550493 ~ 5561433 (+) |
| CI01000012_10223957_10235955 | NA | other | downstream | 1472900 | 10223697 ~ 10236276 (+) |
| G75533 | NA | other | downstream | 2395762 | 11144817 ~ 11145739 (+) |
| G76385 | NA | other | downstream | 3881700 | 12630755 ~ 12675666 (+) |
| G76374 | NA | other | downstream | 3996476 | 12745531 ~ 12749169 (+) |
| CI01000012_13029637_13033226 | RGS17 | other | downstream | 4266451 | 13029435 ~ 13038899 (+) |
