Gene
RNA
| Item | Value |
|---|---|
| gene id | G74808 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 8862377 ~ 8864523 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU85342 | True | 1201 | lncRNA | 0.50 | 5 | 8862377 | 8864523 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_08841980_08849453 | NA | coding | downstream | 12820 | 8841521 ~ 8849557 (-) |
| CI01000012_08805894_08831322 | ARHGAP22 | coding | downstream | 31055 | 8805894 ~ 8831322 (-) |
| CI01000012_08745512_08773403 | PTPN20 | coding | downstream | 88974 | 8745227 ~ 8773403 (-) |
| CI01000012_08712109_08714569 | GDF10A | coding | downstream | 146390 | 8711713 ~ 8715987 (-) |
| CI01000012_08686460_08701212 | NA | coding | downstream | 161165 | 8686460 ~ 8701212 (-) |
| CI01000012_08908244_08917212 | VSTM4A | coding | upstream | 43413 | 8907936 ~ 8917596 (-) |
| CI01000012_08940340_08945093 | DRGX | coding | upstream | 75145 | 8939668 ~ 8945424 (-) |
| CI01000012_08947834_08963715 | ERCC6 | coding | upstream | 83173 | 8947696 ~ 8963812 (-) |
| CI01000012_09001061_09005079 | CXCL12A, CXCL12B, CXCL12, A-SDF1A, SDF1 | coding | upstream | 136170 | 8998826 ~ 9005079 (-) |
| CI01000012_09068458_09070536 | NA | coding | upstream | 203847 | 9067906 ~ 9070765 (-) |
| G74816 | NA | non-coding | downstream | 9372 | 8851072 ~ 8853005 (-) |
| G74867 | NA | non-coding | downstream | 22197 | 8839790 ~ 8840180 (-) |
| G74842 | NA | non-coding | downstream | 105183 | 8756985 ~ 8757194 (-) |
| G74841 | NA | non-coding | downstream | 111931 | 8750230 ~ 8750446 (-) |
| G74837 | NA | non-coding | downstream | 121690 | 8740462 ~ 8740687 (-) |
| G74882 | NA | non-coding | upstream | 126515 | 8991038 ~ 8991246 (-) |
| G74885 | NA | non-coding | upstream | 128698 | 8993221 ~ 8993420 (-) |
| G74887 | NA | non-coding | upstream | 130087 | 8994610 ~ 8994899 (-) |
| G74921 | NA | non-coding | upstream | 475677 | 9340200 ~ 9340405 (-) |
| G74701 | NA | other | downstream | 494734 | 8367019 ~ 8367643 (-) |
| G74648 | NA | other | downstream | 596723 | 8264329 ~ 8265654 (-) |
| CI01000012_07356934_07358497 | NA | other | downstream | 1503832 | 7356863 ~ 7358612 (-) |
| G72629 | NA | other | downstream | 2714883 | 6147011 ~ 6147494 (-) |
| G72294 | NA | other | downstream | 3396520 | 5462840 ~ 5465857 (-) |
| CI01000012_09071892_09073410 | NA | other | upstream | 206848 | 9071371 ~ 9073457 (-) |
| CI01000012_09082056_09083285 | NA | other | upstream | 218213 | 9081877 ~ 9083489 (-) |
| CI01000012_09400481_09401810 | EIF4EBP2 | other | upstream | 533553 | 9398076 ~ 9402378 (-) |
| G74982 | NA | other | upstream | 711125 | 9575648 ~ 9576149 (-) |
