G73716


Basic Information

Item Value
gene id G73716
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9067325 ~ 9068626 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU84089
AGGAAAGCAGCAGGGTGAAGTGGAAGAGTAGAGTGGAAGATAAGACGTTGTCTTACAAAACAGCTGGGCTCTGTAGGCTCTTACAAAGGAACTGCGTTTTACGAGATGGTGAGCTGTATGTACTGCTGTCTTCTTTTGATGGCTACCTAGGCTTTTTCTGAAACTGTTCTCAGGTGGGGAGCATCTCTAGACAGGACCTCTTGTGTTTAAATCAGCCTAAAGCATTTTATGAGTGTGATTCTTTCTGGTGGATACAGTAGATTGTGTATATCCCCCCCTTGAAAGGCGTTTTCTTGCCATGAGGCTAAAATGGCATAATTAATAATTAATGAGGATGGTCATAGACAAAGGTTGGGTAAGTTCATAGAATATTCAAATTCTTTTCCTTCACTGAATGGGAGCCATTTTGTTTGTTTTAGTTAGGTGAATACAGGTAAATCGGGACACATTCTGATAATTTGTATTTTTTAAATTCTGTCATTTAGCACAAATATGTGCATAAAATGCAATACACAAATACCAATAACAATTTTTTAAAGGTTTTATTAGAAATGAGCAGTACAAAAACAATATATACATATTCCATATATATAATACAAATATCTTTTATTTGTGCAAATAAAGGAGAGGCAGGGTAAATGATGAAGTACAGGAATATAGTCTTTCTACACAGAAAAGGTAAGAACTGTTAAGTTAATGTTTCTTGGGACTTTTTGGTCCATTTTTCCTCTTGAACACCAGGCAGGCCTTCTTCTTCCGTATGTTGAATTTAATCCTGGACAATAGAACAGTGAGGGGGTTTAATTATTAGGGAAGCTTGAAAAGCTGAGCAAGCAAAAAAACACATTCTCAACCCTAAATC
>TU84091
AGGAAAGCAGCAGGGTGAAGTGGAAGAGTAGAGTGGAAGATAAGACGTTGTCTTACAAAACAGCTGGGCTCTGTAGGCTCTTACAAAGGAACTGCGTTTTACGAGATGGTGAGCTGTATGTACTGCTGTCTTCTTTTGATGGCTACCTAGGCTTTTTCTGAAACTGTTCTCAGGTATGTGTCTTTATACAGCTGTCAAAACAAACTGTAGGCTTCTAGTGAACCTTCTGACAGACTACATCTGCACCACACGTGAACTAGCATTGTGATATTTTTATAATATGTGCACTTTTCCTTTTCATGATAAAAGCAAATCAAATATAGCTATATTCAACTTTGCATTTTTTTCCTGTGTCTGTCCAACTTCTGCATTATAGTCACACAGAAATTCAGCAGAGGTTAAGGGCTCTATATGCTAGATAAATTCCTGCAGCTGAGAGTCACATCTGTTTTGCAGTAATTGATTGGCTGGACAGGGGGGCTTCACAGTGTAATTTCTTTATGCAGGTGGGGAGCATCTCTAGACAGGACCTCTTGTGTTTAAATCAGCCTAAAGCATTTTATGAGTGTGATTCTTTCTGGTGGATACAGTAGATTGTGTATATCCCCCCCTTGAAAGGCGTTTTCTTGCCATGAGGCTAAAATGGCATAATTAATAATTAATGAGGATGGTCATAGACAAAGGTTGGGTAAGTTCATAGAATATTCAAATTCTTTTCCTTCACTGAATGGGAGCCATTTTGTTTGTTTTAGTTAGGTGAATACAGGTAAATCGGGACACATTCTGATAATTTGTATTTTTTAAATTCTGTCATTTAGCACAAATATGTGCATAAAATGCAATACACAAATACCAATAACAATTTTTTAAAGGTTTTATTAGAAATGAGCAGTACAAAAACAATATATACATATTCCATATATATAATACAAATATCTTTTATTTGTGCAAATAAAGGAGAGGCAGGGTAAATGATGAAGTACAGGAATATAGTCTTTCTACACAGAAAAGGTAAGAACTGTTAAGTTAATGTTTCTTGGGACTTTTTGGTCCATTTTTCCTCTTGAACACCAGGCAGGCCTTCTTCTTCCGTATGTTGAATTTAATCCTGGACAATAGAACAGTGAGGGGGTTTAATTATTAGGGAAGCTTGAAAAGCTGAGCAAGCAAAAAAACACATTCTCAACCCTAAATC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84089 False 862 lncRNA 0.36 3 9067325 9068626
TU84091 True 1195 lncRNA 0.37 2 9067325 9068626

Neighbor

gene id symbol gene type direction distance location
CI01000012_09059209_09062816 TMEM72 coding upstream 4387 9059209 ~ 9062938 (+)
CI01000012_08926039_08935452 NA coding upstream 131464 8925048 ~ 8935861 (+)
CI01000012_08852654_08899169 WDFY4 coding upstream 168156 8852654 ~ 8899169 (+)
CI01000012_08787836_08798682 MAPK8B, MAPK8A, MAPK8 coding upstream 268643 8787836 ~ 8798682 (+)
CI01000012_08706061_08708565 PRDM8 coding upstream 358069 8705916 ~ 8709256 (+)
CI01000012_09074304_09074584 NA coding downstream 4920 9073546 ~ 9074642 (+)
CI01000012_09084147_09092221 RASSF4 coding downstream 15392 9084018 ~ 9092465 (+)
CI01000012_09100081_09103557 NA coding downstream 31403 9100029 ~ 9103609 (+)
CI01000012_09105207_09105705 NA coding downstream 36415 9105041 ~ 9105705 (+)
CI01000012_09107788_09111751 NA coding downstream 39162 9107788 ~ 9112515 (+)
G73712 NA non-coding upstream 64082 8998677 ~ 9003243 (+)
G73809 NA non-coding upstream 70552 8996538 ~ 8996773 (+)
G73804 NA non-coding upstream 100337 8966557 ~ 8966988 (+)
G73726 NA non-coding upstream 164472 8902467 ~ 8902853 (+)
G73785 NA non-coding upstream 226253 8840771 ~ 8841072 (+)
G73718 NA non-coding downstream 13596 9082222 ~ 9083476 (+)
CI01000012_09207245_09207586 NA non-coding downstream 62691 9207181 ~ 9207951 (+)
G73837 NA non-coding downstream 101227 9169853 ~ 9174559 (+)
G73890 NA non-coding downstream 177076 9245702 ~ 9246367 (+)
G73940 NA non-coding downstream 292472 9361098 ~ 9363233 (+)
G73578 NA other upstream 699698 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 1259470 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 3143020 5922385 ~ 5929186 (+)
G71623 NA other upstream 3250720 5813517 ~ 5816605 (+)
G71548 NA other upstream 3505892 5550493 ~ 5561433 (+)
CI01000012_10223957_10235955 NA other downstream 1153329 10223697 ~ 10236276 (+)
G75533 NA other downstream 2076191 11144817 ~ 11145739 (+)
G76385 NA other downstream 3562129 12630755 ~ 12675666 (+)
G76374 NA other downstream 3676905 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 3946880 13029435 ~ 13038899 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G92772 LOC107588620,LOC107707271,LOC107707282 unknown NC_056711.1 CM032080.1 11213526 ~ 11218175 (+)