G74040


Basic Information

Item Value
gene id G74040
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9554657 ~ 9555192 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU84447
GTTTGGATACCCATATTCTTCAAAATATCTTATTTTGTGTATAGCAGAGTAAAGAAATTCATTAGGGATGTAACAATACCCTCATGTCATGATTTGATACATATCAAGATACTGAACTCACGATACGATATTATTGCGATACTTCAAGACATATGGTAAAAGGTTAACAAAAAATTAACTGTTGATACCAGACAATGTTGATACCAGAAGAAAAATATTCATGATTCTGAAGCTGAAAATACAGAAAAATACAAATATGCTTGCACCCTGTCATTGACTAGATATATTTAAAATAATGTAGGCCACTTTTTACTGGTAACACAAGACATTTGCCATTATCAGGACCCACAAATATTCCCCCATTACATTATTATACATTATATTCATCATTATAAATAGTAGTTCAATGTAGTACTTACACTAAAACTGTAAACTTGATTTTTTTTTTTTTTTCTCACAGTTTTCTATACACAATACATATGGTCACTATCCACGATACATAGTTACATTTTTGTACTGCGATATATTGTGACACG

Function

NR:

description
Transposable element Tc1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84447 True 536 lncRNA 0.30 1 9554657 9555192

Neighbor

gene id symbol gene type direction distance location
CI01000012_09503160_09508216 HIF1AN coding upstream 46281 9501951 ~ 9508376 (+)
CI01000012_09487818_09493571 WNT8B, WNT8B.S coding upstream 60411 9487818 ~ 9494246 (+)
CI01000012_09479056_09484643 SCDB coding upstream 69654 9479056 ~ 9485003 (+)
CI01000012_09474489_09475937 TRMT2B coding upstream 78655 9474489 ~ 9476002 (+)
CI01000012_09412867_09415489 NA coding upstream 138978 9412867 ~ 9415679 (+)
CI01000012_09764936_09778598 CDHR1A coding downstream 209390 9764582 ~ 9779401 (+)
CI01000012_09796386_09801947 RGR, RGRA coding downstream 241099 9796291 ~ 9802544 (+)
CI01000012_09812937_09814478 SLC18A3, SLC18A3A coding downstream 257229 9812421 ~ 9815417 (+)
CI01000012_09815706_09822346 CHATA, CHAT coding downstream 260514 9815706 ~ 9822671 (+)
CI01000012_09828421_09828926 NA coding downstream 273229 9828421 ~ 9829388 (+)
G74037 NA non-coding upstream 5651 9548730 ~ 9549006 (+)
G74038 NA non-coding upstream 15061 9539215 ~ 9539596 (+)
G74010 NA non-coding upstream 82047 9472208 ~ 9472610 (+)
G74009 NA non-coding upstream 82600 9468807 ~ 9472057 (+)
G74008 NA non-coding upstream 86207 9467491 ~ 9468450 (+)
G74045 NA non-coding downstream 20402 9575594 ~ 9576007 (+)
G74014 NA non-coding downstream 57388 9612580 ~ 9616089 (+)
G74017 NA non-coding downstream 61138 9616330 ~ 9630807 (+)
G75055 NA non-coding downstream 186275 9741467 ~ 9742248 (+)
G75087 NA non-coding downstream 303098 9858290 ~ 9858518 (+)
G73578 NA other upstream 1187030 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 1746802 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 3630352 5922385 ~ 5929186 (+)
G71623 NA other upstream 3738052 5813517 ~ 5816605 (+)
G71548 NA other upstream 3993224 5550493 ~ 5561433 (+)
CI01000012_10223957_10235955 NA other downstream 666763 10223697 ~ 10236276 (+)
G75533 NA other downstream 1589625 11144817 ~ 11145739 (+)
G76385 NA other downstream 3075563 12630755 ~ 12675666 (+)
G76374 NA other downstream 3190339 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 3460314 13029435 ~ 13038899 (+)

Expression


Co-expression Network