G74014


Basic Information

Item Value
gene id G74014
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9612580 ~ 9616089 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU84420
ATTGAATTGCACATTTGAGACCACCCCGAGAGCAAGAAATAAAAAAGCAAAAACATCACCCATGGAATAAGCATTGTAAATTGTAAACGATACGTAGTTTTCAGTACAAGGCCTCTAAAGGATTTAGATAAATTAGCTGATGATAATTTGGCCGTTAGTGTTTGGAAACGCCGTTTTAATAACAGTAGACTCTACTGCTGAAGGTCGGTAGAGAACGAAACTAACTAATAGTTTTGTTCTGTCATTGACATCATGTTTTTTTTTTTTAATTGAAATTTAAAATGTGAAAATGGAATTTCAACCCGCTTTACCTGTTTATAGATGAAACACTTGGTACTGTGTCGTTGTCACAAACGCCCTCGGCCAGGAGTCGGTCCCTGATCTCCCAAGCGAACATTGTGGGATTCTGCCGCTTGTATTCTGCGATTTTATCCACAACTTTGGGCGTCGCCACTTTTGGTTTGGACCCCCCAATAACTCCAGGTTTAATACTGCCGGTTTCATAATATCTGGAAAAGATGAGCGATAATTTGTTATTTAAAATTTTCCCCACGTCATAGCGATGGCGATTTTTTTTTTTTCTCTAGCGTGTGGCATTGAGCATATAGGCTATTTATAAACAGTGAGTTATGAATACGGGCCATACATACTTATATAATCCAATGATTTAAATATATTTTGACTTTTAAAGTATCAGATGTTATTTTTTTCCCAACCCTTGCGACGGGAAAATGTGTAATTTCTATTTTAACATGTACATTCAATAGGTTTTGCGTCTTCAATCATTAACATTCGTAGGCTGCGATCTAAAATCGCAATCATTCATTTATCAAACGGTTTCCTCAGCGACTGATATATCCCATGCATCCCACGATTAATACATGCCACCAACACATCTCATAATTTCTAAGGAACATTTAAAGTGCAGAATACCTTATAAGATCCTTTTGATAGCTGAAAAATATTTCACAAAATTCAAAAATCTATAACAGTTTCCTAGAAAACATATCCTTCCTCCTTCACAATGAATTCAGTGAATTTAATATTACACCTTTTCACTAAAAGGAAAAAACTTACTAATACGACACATTACATTACAATAATGTTTAGGATGTTTATTTAGTACATGAAGCAATAACATTTGATTACTAGTATTAGTTCTCTATAATTGGACAAATTTGCTACATCTGTAATTTTTCGTACCTTCCGAGAATTTTGCTGACACAGCCATGGCTGACCCGTAGTTGTCTTGAGATGTCACAAGGTCTGACTCCTTGGTGCGCGAGCTCCACGATTCTTTGCCTGACCACGTCAGGTAGGGGTCTGCCATTCACAAACACCCCTCCTAGCTGGTTCACACCGCCGTGCCCTATATGGGATAGGTGCATCGCCGAGAAGGGGTCTGCTTTGCAGTGAATATCCATGGGATAGCAAAGGAAGGAAAGATAATCGACTGAGGTCGCCGTCTCGCCTTGATTATGTAGCTATAATTGGAATTAATAAAGATCGCTATCCGTTCAAAGCACAGTGCTTCCGATGCCAGGGTACAGGAGAAGTTCTTCAGCGAGCGACGAACTTTATCTCGTGCTGATCAGTCCATTCAATGAAGACACGAGGCTGGTCAGGTGCAGATCATGTCCTGCACTAGTCTCTCAAAAAATCTTTTACGCAGGAACGTTAGCGTAATCAGTCGTTCAGTTAATATTTGTTAGCTACATATTTAAGGGAACGCAAGCATTAGTGGTTGCGTCTCCTCCAGTGTCCTCTGGTGAAACTGCAGTGTAAATTCCTCGATATGGAGAAGCGTTTCTGGTAAAGTCTGAGGGGTACAGTCAGATTCGCCCGGGGATGACAGGAAAAAACATGGACACGGCGAGTGTCTCTCGGTCCCCCTCTCTTCAAGAATGGGATGTGCCTGTTAGAA

Function

NR:

description
PREDICTED: probable palmitoyltransferase ZDHHC11

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU84420 True 1924 lncRNA 0.40 2 9612580 9616089

Neighbor

gene id symbol gene type direction distance location
CI01000012_09503160_09508216 HIF1AN coding upstream 104204 9501951 ~ 9508376 (+)
CI01000012_09487818_09493571 WNT8B, WNT8B.S coding upstream 118334 9487818 ~ 9494246 (+)
CI01000012_09479056_09484643 SCDB coding upstream 127577 9479056 ~ 9485003 (+)
CI01000012_09474489_09475937 TRMT2B coding upstream 136578 9474489 ~ 9476002 (+)
CI01000012_09412867_09415489 NA coding upstream 196901 9412867 ~ 9415679 (+)
CI01000012_09764936_09778598 CDHR1A coding downstream 148493 9764582 ~ 9779401 (+)
CI01000012_09796386_09801947 RGR, RGRA coding downstream 180202 9796291 ~ 9802544 (+)
CI01000012_09812937_09814478 SLC18A3, SLC18A3A coding downstream 196332 9812421 ~ 9815417 (+)
CI01000012_09815706_09822346 CHATA, CHAT coding downstream 199617 9815706 ~ 9822671 (+)
CI01000012_09828421_09828926 NA coding downstream 212332 9828421 ~ 9829388 (+)
G74045 NA non-coding upstream 36573 9575594 ~ 9576007 (+)
G74040 NA non-coding upstream 57388 9554657 ~ 9555192 (+)
G74037 NA non-coding upstream 63574 9548730 ~ 9549006 (+)
G74038 NA non-coding upstream 72984 9539215 ~ 9539596 (+)
G74010 NA non-coding upstream 139970 9472208 ~ 9472610 (+)
G74017 NA non-coding downstream 241 9616330 ~ 9630807 (+)
G75055 NA non-coding downstream 125378 9741467 ~ 9742248 (+)
G75087 NA non-coding downstream 242201 9858290 ~ 9858518 (+)
G75089 NA non-coding downstream 243590 9859679 ~ 9859954 (+)
G75113 NA non-coding downstream 305284 9921373 ~ 9922152 (+)
G73578 NA other upstream 1244953 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 1804725 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 3688275 5922385 ~ 5929186 (+)
G71623 NA other upstream 3795975 5813517 ~ 5816605 (+)
G71548 NA other upstream 4051147 5550493 ~ 5561433 (+)
CI01000012_10223957_10235955 NA other downstream 605866 10223697 ~ 10236276 (+)
G75533 NA other downstream 1528728 11144817 ~ 11145739 (+)
G76385 NA other downstream 3014666 12630755 ~ 12675666 (+)
G76374 NA other downstream 3129442 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 3399417 13029435 ~ 13038899 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G47114 LOC101463634 non-coding NC_047597.1 CM018543.1 15596729 ~ 15599206 (-)