Gene
RNA
| Item | Value |
|---|---|
| gene id | G74017 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 9616330 ~ 9630807 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU84423 | True | 1226 | lncRNA | 0.46 | 5 | 9616330 | 9630807 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_09503160_09508216 | HIF1AN | coding | upstream | 107954 | 9501951 ~ 9508376 (+) |
| CI01000012_09487818_09493571 | WNT8B, WNT8B.S | coding | upstream | 122084 | 9487818 ~ 9494246 (+) |
| CI01000012_09479056_09484643 | SCDB | coding | upstream | 131327 | 9479056 ~ 9485003 (+) |
| CI01000012_09474489_09475937 | TRMT2B | coding | upstream | 140328 | 9474489 ~ 9476002 (+) |
| CI01000012_09412867_09415489 | NA | coding | upstream | 200651 | 9412867 ~ 9415679 (+) |
| CI01000012_09764936_09778598 | CDHR1A | coding | downstream | 133775 | 9764582 ~ 9779401 (+) |
| CI01000012_09796386_09801947 | RGR, RGRA | coding | downstream | 165484 | 9796291 ~ 9802544 (+) |
| CI01000012_09812937_09814478 | SLC18A3, SLC18A3A | coding | downstream | 181614 | 9812421 ~ 9815417 (+) |
| CI01000012_09815706_09822346 | CHATA, CHAT | coding | downstream | 184899 | 9815706 ~ 9822671 (+) |
| CI01000012_09828421_09828926 | NA | coding | downstream | 197614 | 9828421 ~ 9829388 (+) |
| G74014 | NA | non-coding | upstream | 241 | 9612580 ~ 9616089 (+) |
| G74045 | NA | non-coding | upstream | 40323 | 9575594 ~ 9576007 (+) |
| G74040 | NA | non-coding | upstream | 61138 | 9554657 ~ 9555192 (+) |
| G74037 | NA | non-coding | upstream | 67324 | 9548730 ~ 9549006 (+) |
| G74038 | NA | non-coding | upstream | 76734 | 9539215 ~ 9539596 (+) |
| G75055 | NA | non-coding | downstream | 110660 | 9741467 ~ 9742248 (+) |
| G75087 | NA | non-coding | downstream | 227483 | 9858290 ~ 9858518 (+) |
| G75089 | NA | non-coding | downstream | 228872 | 9859679 ~ 9859954 (+) |
| G75113 | NA | non-coding | downstream | 290566 | 9921373 ~ 9922152 (+) |
| G75115 | NA | non-coding | downstream | 300727 | 9931534 ~ 9931876 (+) |
| G73578 | NA | other | upstream | 1248703 | 8366806 ~ 8367627 (+) |
| CI01000012_07806089_07811902 | BEND3 | other | upstream | 1808475 | 7805248 ~ 7811902 (+) |
| CI01000012_05923216_05928055 | SRD5A2B | other | upstream | 3692025 | 5922385 ~ 5929186 (+) |
| G71623 | NA | other | upstream | 3799725 | 5813517 ~ 5816605 (+) |
| G71548 | NA | other | upstream | 4054897 | 5550493 ~ 5561433 (+) |
| CI01000012_10223957_10235955 | NA | other | downstream | 591148 | 10223697 ~ 10236276 (+) |
| G75533 | NA | other | downstream | 1514010 | 11144817 ~ 11145739 (+) |
| G76385 | NA | other | downstream | 2999948 | 12630755 ~ 12675666 (+) |
| G76374 | NA | other | downstream | 3114724 | 12745531 ~ 12749169 (+) |
| CI01000012_13029637_13033226 | RGS17 | other | downstream | 3384699 | 13029435 ~ 13038899 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
