Gene
RNA
| Item | Value |
|---|---|
| gene id | G75230 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 9987365 ~ 9987685 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU85809 | True | 321 | lncRNA | 0.34 | 1 | 9987365 | 9987685 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_09976030_09976302 | NA | coding | downstream | 10998 | 9975571 ~ 9976367 (-) |
| CI01000012_09974294_09974754 | NA | coding | downstream | 12309 | 9973339 ~ 9975056 (-) |
| CI01000012_09926268_09941904 | UNC5B | coding | downstream | 44971 | 9926073 ~ 9942394 (-) |
| CI01000012_09894361_09922003 | MYOFL | coding | downstream | 64922 | 9893656 ~ 9922443 (-) |
| CI01000012_09862141_09892366 | PARGA, PARG | coding | downstream | 94999 | 9861875 ~ 9892366 (-) |
| CI01000012_10114837_10117992 | NA | coding | upstream | 126711 | 10114396 ~ 10119291 (-) |
| CI01000012_10119912_10169990 | NA | coding | upstream | 132227 | 10119912 ~ 10169990 (-) |
| CI01000012_10189922_10194006 | NSMCE4A | coding | upstream | 202191 | 10189876 ~ 10194006 (-) |
| CI01000012_10201667_10213604 | NA | coding | upstream | 213712 | 10201397 ~ 10213604 (-) |
| CI01000012_10217709_10222035 | LDB1A, LDB1, LDB1.L | coding | upstream | 229523 | 10217208 ~ 10222035 (-) |
| G75212 | NA | non-coding | downstream | 170329 | 9815978 ~ 9817036 (-) |
| G75189 | NA | non-coding | downstream | 217856 | 9766445 ~ 9769509 (-) |
| G75004 | NA | non-coding | downstream | 345421 | 9641710 ~ 9641944 (-) |
| G75001 | NA | non-coding | downstream | 347716 | 9639446 ~ 9639649 (-) |
| G74997 | NA | non-coding | downstream | 350221 | 9636905 ~ 9637144 (-) |
| G75645 | NA | non-coding | upstream | 98266 | 10085951 ~ 10086261 (-) |
| G75646 | NA | non-coding | upstream | 98590 | 10086275 ~ 10086512 (-) |
| G75647 | NA | non-coding | upstream | 101371 | 10089056 ~ 10089273 (-) |
| G75648 | NA | non-coding | upstream | 102320 | 10090005 ~ 10090218 (-) |
| G75630 | NA | non-coding | upstream | 191444 | 10179129 ~ 10179830 (-) |
| G74982 | NA | other | downstream | 411393 | 9575648 ~ 9576149 (-) |
| CI01000012_09400481_09401810 | EIF4EBP2 | other | downstream | 585397 | 9398076 ~ 9402378 (-) |
| CI01000012_09082056_09083285 | NA | other | downstream | 903876 | 9081877 ~ 9083489 (-) |
| CI01000012_09071892_09073410 | NA | other | downstream | 913908 | 9071371 ~ 9073457 (-) |
| CI01000012_09068458_09070536 | NA | other | downstream | 916698 | 9067906 ~ 9070765 (-) |
| G75608 | NA | other | upstream | 624230 | 10611915 ~ 10620871 (-) |
| CI01000012_12047175_12052116 | NA | other | upstream | 2061359 | 12046728 ~ 12052541 (-) |
| CI01000012_12079581_12084139 | NA | other | upstream | 2091251 | 12078936 ~ 12084260 (-) |
| CI01000012_12954694_12954954 | SF3B5, BRAFLDRAFT_284483 | other | upstream | 2966761 | 12954446 ~ 12957833 (-) |
| G77287 | NA | other | upstream | 3631591 | 13619276 ~ 13633819 (-) |
